Ngoo012108.5


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomada goodeniana
Gene Symbol
-
Assembly
GCA_963969485.1
Location
OZ018305.1:17178665-17185886[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.0013 0.098 13.1 0.3 2 23 206 228 205 228 0.91
2 27 0.56 41 4.8 0.3 1 23 240 263 240 263 0.95
3 27 0.063 4.6 7.8 3.5 1 23 276 299 276 299 0.93
4 27 0.00023 0.016 15.5 5.8 1 23 305 327 305 328 0.95
5 27 0.0099 0.72 10.3 0.4 3 23 335 356 333 356 0.94
6 27 0.0011 0.082 13.3 1.5 1 23 361 384 361 384 0.98
7 27 5e-07 3.7e-05 23.9 0.4 2 23 391 412 390 412 0.96
8 27 4.2e-06 0.00031 20.9 1.3 1 23 418 440 418 440 0.97
9 27 5.5e-05 0.004 17.4 1.0 1 23 446 468 446 468 0.98
10 27 6.8e-05 0.005 17.1 1.3 2 23 581 602 580 602 0.97
11 27 0.0033 0.24 11.8 4.7 1 23 604 627 604 627 0.95
12 27 0.0044 0.32 11.5 0.9 1 23 632 655 632 655 0.96
13 27 0.00049 0.036 14.4 2.2 1 23 661 684 661 684 0.95
14 27 0.0018 0.13 12.6 2.0 2 23 691 713 690 713 0.95
15 27 0.0067 0.49 10.9 0.3 1 23 718 740 718 740 0.96
16 27 0.0011 0.077 13.4 0.5 3 23 748 767 747 767 0.98
17 27 8.7e-06 0.00063 20.0 0.1 1 23 773 795 773 795 0.97
18 27 0.00083 0.06 13.7 0.4 1 23 801 823 801 823 0.97
19 27 0.00034 0.025 15.0 0.2 1 23 919 941 919 941 0.98
20 27 0.0072 0.52 10.8 3.4 1 23 943 966 943 966 0.94
21 27 0.021 1.5 9.3 1.0 1 23 971 994 971 994 0.95
22 27 8.9e-05 0.0065 16.8 1.3 1 23 1000 1023 1000 1023 0.96
23 27 0.0024 0.17 12.3 1.5 3 23 1031 1052 1029 1052 0.95
24 27 0.0069 0.5 10.8 1.5 1 23 1057 1079 1057 1079 0.96
25 27 9.1e-06 0.00066 19.9 0.1 2 23 1086 1107 1085 1107 0.97
26 27 4.5e-05 0.0033 17.7 0.1 1 23 1113 1135 1113 1135 0.97
27 27 0.0015 0.11 12.9 0.4 1 23 1141 1163 1141 1163 0.97

Sequence Information

Coding Sequence
ATGAAGAAATGGCAGATCCTGGAATTCGATGGAAAGCCGTACTACGCGTTTGTACCTGAAGGCGACACGCCAATGGCCGACGAAGACATACCCGAACAGATGGACGAGGCCGCGAGCAAGGAAGAGAAGCAGAACAACGTGAAGGTCGAGTGTCTGTACAACGACGAGGATCTGCAGTACGATTCGTCCGACGAGAAGCTGTACGAAGAGGAGCACCTGTTAAACGGAAGCTCCGAGCAacgggacgaggacgaggacgtgAAGCCGATAATCCTGAACGGCAGCATCGACGGCGAGAACGACAAGACAATTGGCGACCTGTACCAGGTGAAGGTGCAAGGTAGCATGGTGACGATAGAGAAGCTGATGTCCAATGAGGTGGACGTCAAGGAGATCGTGGAGTATCAGCAGGACGACCAAGACGACCAGGCGTTGTACAACGATCACGAGCAATTGGAGCAAATCGAACAGGACGATCAGGTTGGCCAGGATCAGGATCAGGACCAGGTGGAGGAGGTGGAGTACTTGGAGGAGGAGATGCTGGAGTCCGTGAACAATCATTCGACGCCGACGAAGACGCGCCGAAAGGTGTCAAGGGGCGCGGCCGGCGCGCTGAAGTGCAAGGTGTGCTCGGAGATGTTCAGCTCGGCGATTTCGTTCAGGAAACACGTTGCGTGGACGCACAAGAAGAAGGTCTGCATACAGGAGGACGGCGCGTACATATGCGCGGTCTGCGACTACAGGACGTTGAAGAAGAGCCTGTTCGCCGCTCACCTGGAGAGGAAACACGAGACATGGTCGCGCAAACGACCGAACAACGTGCTGTTCCCGTGTGCCGCCTGCGGTTTCGTCTGCCGATCGAAACACTCGTTGCAGTCGCACTTCATCAGGAAGCACACCGACCGGTACGAGCACCAATGCAAATTCTGCCCGAAGAAGTTCAAGGTGAAGGGCGACCTGACGAACCACGTGCGATTTCACCACAAGGAGAAACCGATCAACTGCGACGTGTGCGGGAAATTGTGCCAGAACAGCGGATCCCTGTACGTGCACCAGAAGTGGGCGCATTACAAGCCGAAATACGAGTGTCACATCTGCAAGAGGCGGATGGTAACGCAGGAGAACCTCGATCAACATTTGCTCACGCAGCACGAGAAGAGGGAGAAGATTGTCTGCGCTGAATGCGGCAAGACGTTCACCAAGAAGGACTCGTTCAAAAGGCACATGGCTGTGCACACCGGCTGCAAGCCCCATTCCTGTCTGATATGCAACAAACCGTTCGCAAGGAGGTCGCAGTTGCGCCAGCACTTGCTCATCCATACCGGGAAGAGGCCGTTCGTATGCGATATCTGCGGGAAAGCGTTCACGCAGAAGCCCGGTCTGATTTGTCACAGGAAGACGCATCCGGGGCCTCATCCCCCGTTGCCGGTTATGCCGATCGCGGATATCGTGAAGGAATTCACGGAGGGATACGTTCAGGAGATAAACGCGCGAGAGAACGAGGAGAGAATCGAAGAGGAAGCAAGCCTGGATCCCCTCAGCGAAGAATTCAAATCGGATTCGCGCTCGAACTCCCCGATAGATTTCCCCGAAGGATATATAAATTGGATCGGCAAGGAGAACTTGGATGTCGCCCACGGAAAGCACCGAGACAACGATCTGGACAATCCGTCGGAAACAGACGCCGGTCTGTGTCTGTCGGGCAACCCCAACGATCGATACAAGAAGAAAGTTCGTTTAGAATGCGACCACTGTCGACGCAAGTTCCCGAATAAGGCCGATCTGGCCGAGCACCTGAAGAAACACCGGCACAAATGCTCCGACTGCCCGAAGACGTTCAGGCTTCGCCGGTGCCTGTCCTCGCACGTGGAGAAGATTCACCGCCGTCAGGTTTACGATTGCAGCGTTTGCGAGTACAAGAGCAACAACAAGGGCACCCTGAAGAACCATTACATCCGTCTGCACACGACGAGCTACAACTTCGCGTGCGACACTTGCGGCAAACAGTTCAAAATCAAGAAAGCGTTGAACCACCACGTGAAACAGAATCACAGCGACGCCCCGCCCATAGTGTGCGACGTTTGCGGTCATTTCAGTAAAAATCTGCACGCGCTGAAGGCCCACATGAAGTACAGGCACTACAAGCCCGAGTTCGTCTGTCGGATTTGTCGTAGGGGCATGACCACGCAGGAGAATCTCGAGCAGCATTTAACGTGGCACGAGACCCGGGAGAAGGTGTTGTGCCCCACCTGTGGGAAGAGGTTCAGGGGTCGGGACCTTGACTCTCACATGCGGGTGCACACCGGCGTGAAACCGTTCCCCTGTCCGGTTTGCgggaaatcgtttcgacggcAAACTGCTCAGGAGCAGCACGTATTGATTCACACGGGTAAGAGGCCGTACGTCTGCGACATTTGCGGCCAGGCGTTCGCACAGAAGCCGGGGCTAATTTGTCACAGGAAACGTCATCCTGGACCGTTGCCGCCGTTGCCCGTCGTCTCGATCAAGAATATCGTGACGGAGTTCACGAGGGACTCCCCGCGAGATCCCCTGAACAGCGGCGGCGCGAACCCGTTGGAGGAGCTCTGCTACATCAAGATAGAAAACTCCTATTCCCTGAACAGACGGGAACGCAAACGGGAAAGGGACCGGATCCgcagaatgaaattgaagatACTCGCGAATCCCTCCCGGAGCCCGACAGCGTCGAAGATCCTCGAAACGATCACGCCAAAGAAGGAGACCGATCAGCTGTACGAGTGCGACTTCTGCGGCGATCAATTCGACCGGAAACCGTACCTGGTGGCCCACATGAAGATACACAAGCACCGTTGCAGGACCTGCGATCAAACGTTCAAGCTGCGGAAAGACCTGAAGCTGCACACGTTACAGGCACACGGGCCGGTCTTGTATCCGTGCACAATCTGCGAGTACAAGAGCAACAACAGATGGACGCTGAAGGACCACTTCATCAGGAAGCACACGAGCAGCTTCGAGTACTCGTGCACGATCTGCGGGAAGCAGTTCAAAATCAAGAACGATCTGTTGCAGCACACGAAACAGATGCACAGCAACGCGCCGCCGATTATATGCACCGTATGCGGCCACGCTTGCAAGAGCGTGCCCTCGTTGAAGGCGCACATGAAGTACAGACACTACAAGCCCGCGTACGAGTGCAGCTTGTGCAAACGTTGCATGACGACCGCGAAGAACCTGGAGCTGCACACGATATGGCATCAGACGAAGGAGAAAGTGGTTTGCCCGACGTGCGGCAAGACCTTCGGGCAGAAGAGGGATCTGGATCTTCATTTGAGGATCCACGAGGGTATCAGGCCGTTCGCATGTCCGGTTTGCGGGAAGAAATTTCCAAGGAGGACCGCCCAGGAACAGCACATACTGATACACACCGGGCAACGGCCGTACATTTGTGATATATGCGGGCAGGCGTTCGCACAGAAGCCGGGTCTGATCTGCCACCGGAAGCGTCATCCCGGACCCCTGCCGCCGCTTCCAGTGGTCTCCATTAAGAAGATCATCGCGGACTTCACGCGGGGattgaacgacgcgacgacggaGAAGAAGGAGAATTGA
Protein Sequence
MKKWQILEFDGKPYYAFVPEGDTPMADEDIPEQMDEAASKEEKQNNVKVECLYNDEDLQYDSSDEKLYEEEHLLNGSSEQRDEDEDVKPIILNGSIDGENDKTIGDLYQVKVQGSMVTIEKLMSNEVDVKEIVEYQQDDQDDQALYNDHEQLEQIEQDDQVGQDQDQDQVEEVEYLEEEMLESVNNHSTPTKTRRKVSRGAAGALKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNVLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPINCDVCGKLCQNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARENEERIEEEASLDPLSEEFKSDSRSNSPIDFPEGYINWIGKENLDVAHGKHRDNDLDNPSETDAGLCLSGNPNDRYKKKVRLECDHCRRKFPNKADLAEHLKKHRHKCSDCPKTFRLRRCLSSHVEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTSYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTRDSPRDPLNSGGANPLEELCYIKIENSYSLNRRERKRERDRIRRMKLKILANPSRSPTASKILETITPKKETDQLYECDFCGDQFDRKPYLVAHMKIHKHRCRTCDQTFKLRKDLKLHTLQAHGPVLYPCTICEYKSNNRWTLKDHFIRKHTSSFEYSCTICGKQFKIKNDLLQHTKQMHSNAPPIICTVCGHACKSVPSLKAHMKYRHYKPAYECSLCKRCMTTAKNLELHTIWHQTKEKVVCPTCGKTFGQKRDLDLHLRIHEGIRPFACPVCGKKFPRRTAQEQHILIHTGQRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKKIIADFTRGLNDATTEKKEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00220718;
90% Identity
iTF_01069109;
80% Identity
-