Mbee009986.1
Basic Information
- Insect
- Melipona beecheii
- Gene Symbol
- -
- Assembly
- GCA_032399605.1
- Location
- JAUCMO010000463.1:9382315-9390241[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0015 0.12 13.0 0.3 2 23 249 271 248 271 0.91 2 27 0.61 50 4.8 0.3 1 23 283 306 283 306 0.95 3 27 0.068 5.6 7.8 3.5 1 23 319 342 319 342 0.93 4 27 0.00024 0.02 15.5 5.8 1 23 348 370 348 371 0.95 5 27 0.011 0.87 10.3 0.4 3 23 378 399 376 399 0.94 6 27 0.0003 0.025 15.1 2.0 1 23 404 427 404 427 0.98 7 27 5.4e-07 4.4e-05 23.8 0.4 2 23 434 455 433 455 0.96 8 27 2.3e-06 0.00019 21.8 2.0 1 23 461 483 461 483 0.97 9 27 5.9e-05 0.0049 17.4 1.0 1 23 489 511 489 511 0.98 10 27 0.0051 0.42 11.3 3.4 2 23 615 636 614 636 0.97 11 27 0.00034 0.028 15.0 2.4 1 23 638 661 638 661 0.95 12 27 0.0047 0.39 11.4 0.9 1 23 666 689 666 689 0.96 13 27 0.00053 0.044 14.4 2.2 1 23 695 718 695 718 0.95 14 27 0.002 0.16 12.6 2.0 2 23 725 747 724 747 0.95 15 27 0.0073 0.6 10.8 0.3 1 23 752 774 752 774 0.96 16 27 0.0011 0.094 13.3 0.5 3 23 782 801 781 801 0.98 17 27 9.4e-06 0.00077 19.9 0.1 1 23 807 829 807 829 0.97 18 27 0.00089 0.073 13.7 0.4 1 23 835 857 835 857 0.97 19 27 1.4e-05 0.0012 19.3 1.0 2 23 965 986 964 986 0.96 20 27 0.047 3.8 8.3 2.7 1 23 988 1011 988 1011 0.90 21 27 0.022 1.8 9.3 1.0 1 23 1016 1039 1016 1039 0.95 22 27 0.0051 0.42 11.3 0.3 1 23 1045 1068 1045 1068 0.94 23 27 0.0026 0.21 12.2 1.5 3 23 1076 1097 1074 1097 0.95 24 27 0.00033 0.027 15.0 2.1 1 23 1102 1124 1102 1124 0.97 25 27 9.8e-06 0.0008 19.8 0.1 2 23 1131 1152 1130 1152 0.97 26 27 2.5e-05 0.0021 18.5 0.1 1 23 1158 1180 1158 1180 0.98 27 27 0.0012 0.099 13.3 1.5 1 23 1186 1208 1186 1208 0.98
Sequence Information
- Coding Sequence
- ATGAAAAAATGGCAGATCCTGGAGTTCGACGGGAAGCCGTACTACGCGTTTGTACCTGAAAACGACACGCCGTTGCCGGACGAGGATATATCGGAACTGATAGACGAGGCCGGCCAAGAGGACGAGAAACAGGACCTGGTGAAGGTCGAATGCCTGTACAACGAGGACGAGTtgcagtacgattcgtccGACGAGAAACTGTACGAGGAGAGCGAGGATCCTCTGAGCAGGAACGCAGAGCAGAAAGACGACGGCGATATCAAACCTATAATGTTGAACGGGACGATggacgaggaggaggcggACAAGTCGTCGTCTGGGGACATTTACCAAGTTAGGGTTCAAGGTAGCATGGTAACCATCGAGAAACTGACGTCCAGCGACATAGAAGAGGCGAAAGAGATGCTGGAGTATCAGCAGGACGAGGAGCAAGAGGAGCAAGAGGAGCAGGAGGAAGTGTACAACGATCAGGAACAGTTGGATCAGGAGGAACAGGTGGATCAAATCGATCATATGGAGCAGATGGATCAGATAGATCAGATGGATCAGATGGATCAGATGGATCAGATGGATCAGATGGATCAGATGGATCAGATGGATCAGATGGATCAGATGGAGGACGATCCGGATCAGATAGAGCACGTGGAGTACCTGGAGGAGGAGATCCTAGAGTCCGCGAACAATCACGTCGCGCCGACGAAGCGCGGCAGGAAGAGCGTTTCGAGGAGCGTCGGCGGTGCGTTGAAGTGCAAGGTCTGCTCGGAGATGTTCAGCTCGGCGATTTCGTTCAGGAAGCACGTGGCGTGGACGCACAAGAAGAAGGTGTGCATACAGGAGGACGGCGCGTACATCTGCGCGGTCTGCGACTACAGGACGCTGAAGAAGAGCCTGTTCGCGGCTCACTTGGAGAGGAAGCACGAAACCTGGTCGAGGAAACGACCGAACAACATGCTGTTCCCTTGCGCTGCCTGCGGCTTCGTGTGCAGGTCGAAACACTCGTTACAGTCGCACTTCATACGAAAGCACACCGATCGGTACGAGCACCAGTGCAAGTTTTGCCCGAAGAAGTTCAAGGTGAAGGGCGATCTGACGAACCACGTGCGATTCCATCACAAGGAGAGGCCGATCAACTGCGACGTCTGCGGGAAACTGTGCCAGAACAGCGGCTCCCTTTACGTGCACCAGAAGTGGGCTCATTACAAGCCGAAGTTCGAGTGCCACATATGCAAACGACGCATGGTCACGCAGGAGAACCTGAATCAGCATCTGCTGACGCAGCACGAGAAACGGGAGAAGATCGTGTGCGCCGAGTGCGGCAAAACGTTCACGAAGAAGGACTCGTTCAAGAGGCACATGGCGGTGCACACGGGCTCCAAGCCACATTCCTGCCTGATCTGCAACAAATCGTTCGCCAGGAGATCCCAGCTGCGTCAACACTTGCTCATCCACACCGGCAAGAGGCCGTTCGTCTGCGACATTTGCGGCAAGGCGTTCACGCAGAAGCCTGGGCTGATTTGTCACAGAAAGACTCACCCTGGCCCTCATCCTCCGTTGCCCGTCATGCCGATCGCTGACATCGTCAAGGAGTTCACCGAGGGTTACGTGCAGGAGATAAACGCGCGCGAGTCCGAGGAGAGGCTCGAGGAGGAAGCACTCTTGGACCCTCTCAGCGAGCTGAAGGTCGAAGAACTGCAGCTGGATCTCCCCGAGGAGTACGAGAGCTGGATCGGCAAAGAGAACTTCCAAGTCGTGCCGATCGTCAAAGAGGAAACAGAAGCGGAATCCTTTCGAAACAGTCGCGACCAGCAGTCGTCGAGAAAGAAGAGCGTAACCGGGCACCTGGAGTGCGACCACTGTCGACGAAAGTTCCTGAAGAAGAGCAACTTGGCCGAGCATTTGAAGAAACACAGGCACAGGTGTCCCGACTGTCCGAAGACTTTCAGGCTTCACCGATACCTGGCCTCCCACGTCGAGAAGATCCATCGGCGTCAGGTGTACGACTGCAGCGTTTGCGAGTACAAGAGCAACAACAAAGGCACGCTGAAGAACCACTACATCCGTCTGCACACAACCAGCTACAACTTCGCCTGCGACACGTGCGGCAAACAGTTCAAGATCAAGAAAGCGCTGAACCACCACGTGAAGCAGAATCACAGCGACGCGCCGCCCATAGTGTGCGACGTTTGCGGCCACTTCAGCAAGAATCTTCACGCGCTGAAGGCTCACATGAAGTACAGGCACTACAAGCCGGAGTTCGTGTGCCGGATCTGCCGAAGAGGGATGACCACTCAGGAGAATCTCGAGCAACATCTGACGTGGCACGAGACCAGGGAGAAGGTGCTCTGCCCTACCTGCGGGAAGAGGTTCCGTGGCCGGGACCTGGACTCTCACATGCGAGTGCACACGGGAGTGAAGCCGTTCCCCTGTCCCGTTTGCGGCAAGTCGTTCAGAAGGCAGACCGCCCAGGAGCAGCACGTTCTCATACACACGGGCAAGAGGCCGTACGTTTGCGACATTTGCGGCCAGGCTTTCGCACAGAAACCTGGCCTGATTTGCCACAGGAAGCGTCATCCTGGACCACTGCCACCATTGCCTGTCGTTTCCATCAAGAACATCGTCACGGAGTTCACCAAGGATTCGCCGGCGTTGGATCCGCTGAACGGCAGCGACGCGAATCCTCTCGAGGAACCGTGCACCATCAAAATAGAGAACTCGTACACCCTGGCGAAGACGGACCGAAGACGAGTGAGAAGAGCGAACCTGAAGGTCCGCGCTGTGACGATGTCTCGATGCCTGAAAACGAGAAAGCCCGTCGAGTCCGTCTCGAAGTCTCggagaagagaagggaagaTTCACCCGAGAAAGACGAGGAGACAGACGGAACTTCCGTTGGAGTGTGACTTTTGCGGGAAGCAGTTCGACAGAAAGTCGTTTCTGGCGTCGCACATGAAGCAGCACAGACACCGGTGCAAAAGCTGCAGCGAAACGTTCAGGCTGCGAAAAGACTTGAAGGAGCATTCGGAGCAGATCCACGGCCCGGTGTTGTACCCGTGCACGATCTGCGAGTACAAGAGCAACAACAGATGGACGTTGAAGGACCATTTCATCCGGAAGCACACGAGCAGCTTCGACTACTCGTGCGCGGTCTGCGGCAAGCAGTTCAAGATCAAGAACGACATGGTGCAGCACGCGAAGCAGATGCACAGCAACGCGCCGCCGATCATCTGCACCGTTTGCGGCCACGCCTGCAAGAGCGTGCCCTCGTTGAAGGCGCACATGAAGTACAGACACTACAAACCCGCGTACGAGTGCAGCCTCTGCAAACGTTGCATGACGACGCAGAGCAACCTCGAGCAACACTTGCTCTGGCACAAGAGGAAGGAGAAGGTGGTTTGCCCGACCTGCGGCAAGACGTTCGGCCAGAAGAGAGACTTGGATCTTCATTTGAGGATCCACGAAGGCATCAGGCCGTTCTCGTGCCCGGTCTGCGGCAAGAAGTTCCCGAGGAGGACCGCCCAGGAGCAACACATCCTGATACACACCGGTCAGAGACCGTACACCTGTGATATCTGCGGGCAGAAGTTCGCGCAGAAGCCGGGACTGATCTGTCACAGGAAGCGGCATCCCGGCCCTCTACCGCCGCTTCCCGTCATCTCCATCAGGAAGATCATCGCCGATTTCACTCGGGGACTGAACGATCCCGCCGTCGACAAGAAGGAGAACTGA
- Protein Sequence
- MKKWQILEFDGKPYYAFVPENDTPLPDEDISELIDEAGQEDEKQDLVKVECLYNEDELQYDSSDEKLYEESEDPLSRNAEQKDDGDIKPIMLNGTMDEEEADKSSSGDIYQVRVQGSMVTIEKLTSSDIEEAKEMLEYQQDEEQEEQEEQEEVYNDQEQLDQEEQVDQIDHMEQMDQIDQMDQMDQMDQMDQMDQMDQMDQMDQMEDDPDQIEHVEYLEEEILESANNHVAPTKRGRKSVSRSVGGALKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKERPINCDVCGKLCQNSGSLYVHQKWAHYKPKFECHICKRRMVTQENLNQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGSKPHSCLICNKSFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARESEERLEEEALLDPLSELKVEELQLDLPEEYESWIGKENFQVVPIVKEETEAESFRNSRDQQSSRKKSVTGHLECDHCRRKFLKKSNLAEHLKKHRHRCPDCPKTFRLHRYLASHVEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTSYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKDSPALDPLNGSDANPLEEPCTIKIENSYTLAKTDRRRVRRANLKVRAVTMSRCLKTRKPVESVSKSRRREGKIHPRKTRRQTELPLECDFCGKQFDRKSFLASHMKQHRHRCKSCSETFRLRKDLKEHSEQIHGPVLYPCTICEYKSNNRWTLKDHFIRKHTSSFDYSCAVCGKQFKIKNDMVQHAKQMHSNAPPIICTVCGHACKSVPSLKAHMKYRHYKPAYECSLCKRCMTTQSNLEQHLLWHKRKEKVVCPTCGKTFGQKRDLDLHLRIHEGIRPFSCPVCGKKFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPPLPVISIRKIIADFTRGLNDPAVDKKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00220718;
- 90% Identity
- iTF_00983097;
- 80% Identity
- -