Mbic003960.1
Basic Information
- Insect
- Melipona bicolor
- Gene Symbol
- -
- Assembly
- GCA_030673865.1
- Location
- JAHYIQ010000002.1:9316424-9323493[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0015 0.16 13.0 0.3 2 23 234 256 233 256 0.91 2 27 0.62 68 4.8 0.3 1 23 268 291 268 291 0.95 3 27 0.069 7.6 7.8 3.5 1 23 304 327 304 327 0.93 4 27 0.00025 0.027 15.5 5.8 1 23 333 355 333 356 0.95 5 27 0.011 1.2 10.3 0.4 3 23 363 384 361 384 0.94 6 27 0.00031 0.034 15.2 2.0 1 23 389 412 389 412 0.98 7 27 5.5e-07 6e-05 23.8 0.4 2 23 419 440 418 440 0.96 8 27 4.6e-06 0.00051 20.9 1.3 1 23 446 468 446 468 0.97 9 27 6e-05 0.0066 17.4 1.0 1 23 474 496 474 496 0.98 10 27 0.0052 0.57 11.3 3.4 2 23 600 621 599 621 0.97 11 27 7.7e-05 0.0084 17.1 1.1 1 23 623 646 623 646 0.95 12 27 0.0048 0.52 11.4 0.9 1 23 651 674 651 674 0.96 13 27 0.00054 0.059 14.4 2.2 1 23 680 703 680 703 0.95 14 27 0.002 0.22 12.6 2.0 2 23 710 732 709 732 0.95 15 27 0.0074 0.81 10.8 0.3 1 23 737 759 737 759 0.96 16 27 0.0012 0.13 13.4 0.5 3 23 767 786 766 786 0.98 17 27 9.5e-06 0.001 19.9 0.1 1 23 792 814 792 814 0.97 18 27 0.0009 0.099 13.7 0.4 1 23 820 842 820 842 0.97 19 27 1.4e-05 0.0016 19.3 1.0 2 23 950 971 949 971 0.96 20 27 0.047 5.2 8.3 2.7 1 23 973 996 973 996 0.90 21 27 0.023 2.5 9.3 1.0 1 23 1001 1024 1001 1024 0.95 22 27 0.0052 0.57 11.3 0.3 1 23 1030 1053 1030 1053 0.94 23 27 0.0026 0.29 12.3 1.5 3 23 1061 1082 1059 1082 0.95 24 27 0.00034 0.037 15.0 2.1 1 23 1087 1109 1087 1109 0.97 25 27 9.9e-06 0.0011 19.9 0.1 2 23 1116 1137 1115 1137 0.97 26 27 2.6e-05 0.0028 18.6 0.1 1 23 1143 1165 1143 1165 0.98 27 27 0.0012 0.13 13.3 1.5 1 23 1171 1193 1171 1193 0.98
Sequence Information
- Coding Sequence
- ATGAAAAAATGGCAGATCCTGGAGTTCGACGGGAAGCCGTACTACGCGTTTGTACCTGAAAACGACACGCCGTTGCCGGACGAGGATATATCGGAACTGATGGACGAGGCCGGCCAAGAGGACGAGAAACAGGACCTGGTGAAGGTCGAATGCCTGTACAACGAGGACGAGTTGCAGTACGATTCGTCCGACGAGAAACTGTACGAGGAGAGCGAGGATCCTCTGAGCAAAAGCGCAGAGCAGAAAGACGACGGCGATATCAAACCTATAATCTTAAACGGGACGATggacgaggaggaggcggACAAGTCGTCGTCTGGGGACATTTACCAAGTTAGGGTTCAAGGTAGCATGGTAACCATCGAGAAACTGACTTCCAGCGACATGGAAGAGACGAAAGAGATGGTGGAGTATCAGCAGGACGAGGAGCAAGAGGAGCAAGAGGAGCAGGAGGAAGTGTACAACGATCAGGAACAGTTGGATCAGGAGGAACAGGTGGATCAAATCGATCAGATAGATCATATGGAGCAGATGGATCAGATAGATCAGATGGATCAGATGGATCAGATGGAGGACGATCCGGATCAGATGGAGCACGTGGAGTACCTGGAGGAGGAGATCCTAGAGTCCGCGAACAATCACGTCGCGCCGACGAAGCGCGGCAGGAAGAGCGTTTCGAGGAACGCCGGCGGTGCGTTGAAGTGCAAGGTCTGCTCGGAGATGTTCAGCTCGGCGATTTCGTTCAGGAAGCACGTGGCGTGGACGCACAAGAAGAAGGTGTGCATACAGGAGGACGGCGCGTACATCTGCGCGGTCTGCGACTACAGAACGCTGAAGAAGAGCCTGTTCGCGGCTCACTTGGAGAGGAAGCACGAAACCTGGTCGAGGAAACGACCGAACAACATGCTGTTCCCTTGCGCTGCCTGTGGTTTCGTGTGCAGGTCGAAACACTCGTTACAGTCGCACTTCATACGAAAGCACACCGATCGGTACGAGCACCAGTGCAAGTTCTGCCCGAAGAAGTTCAAGGTGAAGGGCGATCTGACGAACCACGTGCGGTTCCATCACAAGGAGAAGCCGATCAACTGCGACGTCTGCGGGAAACTGTGCCAGAACAGCGGCTCCCTTTACGTGCACCAGAAGTGGGCGCATTACAAGCCGAAGTTCGAGTGCCACATATGCAAACGACGCATGGTCACGCAGGAGAATCTTAATCAGCATCTGCTGACGCAGCACGAGAAACGGGAGAAGATCGTGTGCGCCGAGTGCGGCAAGACGTTCACGAAGAAGGACTCGTTCAAGAGGCACATGGCGGTGCACACGGGCTGCAAGCCACATTCCTGCCTGATCTGCAACAAACCGTTCGCCAGGAGGTCCCAGCTGCGTCAACACTTGCTCATCCACACCGGCAAGAGGCCGTTCGTTTGCGACATTTGCGGCAAGGCGTTCACGCAGAAGCCTGGACTGATTTGTCACAGGAAAACTCACCCTGGCCCTCATCCTCCGTTGCCCGTCATGCCGATCGCCGATATCGTCAAGGAGTTCACCGAGGGTTACGTGCAGGAGATAAACGCGCGCGAGACCGAGGAGAGGCTCGAGGAGGAAGCACTCTTGGACCCTCTCAGCGAGCTGAAGGTCGAAGAACTGCAGCTGGATCTCCCCGAGGAGTACGAGAGCTGGATCGGCAAAGAGAACTTCCAGGTCGTGCCGATCGTCAAAGAGGAAACAGAAGCGGAATCCTTCCGAAACAGTCGCGACCAACAGTCGTCGAGAAAGAAGGGCGTAGCCGGGCACCTGGAGTGCGACCATTGTCGACGAAAGTTCCTGAAGAAGAGCAACTTGGCCGAGCATTTGAAGAAACACAGGCACAGGTGTCCCGACTGTCCGAAGACTTTCAGGCTTCGCCGATACCTGGCCTCCCACGTCGAGAAGATCCATCGGCGTCAGGTGTACGACTGCAGCGTTTGCGAGTACAAGAGCAACAACAAAGGCACGCTGAAGAACCACTACATCCGTCTGCACACGACCAGCTACAACTTCGCCTGCGACACGTGCGGCAAACAGTTCAAGATCAAGAAAGCGCTGAACCATCACGTGAAGCAGAATCACAGCGACGCGCCGCCCATAGTGTGCGACGTTTGCGGCCACTTCAGCAAGAATCTTCACGCGCTGAAGGCTCACATGAAGTACAGGCACTACAAGCCGGAGTTCGTGTGCCGGATCTGCCGAAGAGGCATGACCACTCAGGAGAATCTCGAGCAACATCTGACGTGGCACGAGACCAGGGAGAAGGTGCTGTGCCCTACCTGCGGGAAGAGGTTCCGTGGCCGGGACCTGGACTCTCACATGCGCGTGCACACGGGAGTGAAGCCGTTCCCCTGTCCCGTTTGCGGCAAGTCGTTCAGAAGGCAGACCGCCCAGGAGCAGCACGTTCTCATACACACGGGCAAGAGGCCGTACGTTTGCGACATTTGCGGCCAGGCTTTCGCACAGAAACCTGGCTTGATTTGCCACAGGAAGCGTCATCCTGGACCACTGCCGCCATTGCCTGTCGTTTCCATCAAGAACATCGTCACGGAGTTCACCAAGGATTCGCCGGCGTTGGATCCGCTGAACGGCAGCGACGCGAATCCTCTCGAGGAACCGTGCACCATCAAAATAGAGAACTCGTACACCCTGGCAAAGACGGACCGAAGACGAGTGAGAAGAACGAACCTGAAGGTCCGCGCTGTGACGATGTCTCGATGCCTGAAAACGAGAAAGCCCGTCGAGTCCGTCTCGAAGTCtcagagaagagaagagaagattCACCCGAGAAAGACGAGGAGACAGACGGAACTTCCGTTGGAGTGTGACTTTTGCGGGAAGCAGTTCGACAGAAAGTCGTTTCTGGCGTCGCACATGAAGCAGCACAGACACCGGTGCAAAAGCTGCAGCGAAACGTTCAGGCTGCGAAAAGACTTGAAGGAGCATTCGGAGCAGATCCACGGCCCGGTGTTGTACCCGTGCACGATCTGCGAGTACAAGAGCAACAACAGATGGACGTTGAAGGACCATTTCATCCGGAAGCACACGAGCAGCTTCGACTACTCGTGCGCGGTCTGCGGCAAGCAGTTCAAGATCAAGAACGACATGGTGCAGCACGCGAAGCAGATGCACAGCAACGCGCCGCCGATCATCTGCACCGTTTGCGGCCACGCCTGTAAGAGCGTGCCCTCGTTGAAGGCGCACATGAAGTACAGACACTACAAGCCCGCGTACGAGTGCAGCCTCTGCAAACGTTGCATGACGACGCAGAGCAACCTCGAGCAGCACTTGCTCTGGCACAAGAGGAAGGAGAAGGTGGTTTGCCCGACCTGTGGCAAAACGTTCGGCCAGAAGAGAGACTTGGATCTCCATTTGAGGATCCACGAAGGCATCAGGCCGTTCTCGTGCCCGGTCTGCGGCAAGAAGTTCCCGAGGAGGACCGCCCAGGAGCAACACATCCTGATACACACCGGTCAGAGACCGTACACCTGTGATATCTGCGGGCAGAAGTTTGCGCAGAAGCCGGGACTGATCTGTCACAGGAAGCGGCATCCCGGCCCTCTACCGCCGCTTCCCGTCATCTCCATCAGGAAGATCATCGCCGATTTCACTCGGGGACTGAACGATCCCGCCGTCGACAAAAAGGAGAACTGA
- Protein Sequence
- MKKWQILEFDGKPYYAFVPENDTPLPDEDISELMDEAGQEDEKQDLVKVECLYNEDELQYDSSDEKLYEESEDPLSKSAEQKDDGDIKPIILNGTMDEEEADKSSSGDIYQVRVQGSMVTIEKLTSSDMEETKEMVEYQQDEEQEEQEEQEEVYNDQEQLDQEEQVDQIDQIDHMEQMDQIDQMDQMDQMEDDPDQMEHVEYLEEEILESANNHVAPTKRGRKSVSRNAGGALKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPINCDVCGKLCQNSGSLYVHQKWAHYKPKFECHICKRRMVTQENLNQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARETEERLEEEALLDPLSELKVEELQLDLPEEYESWIGKENFQVVPIVKEETEAESFRNSRDQQSSRKKGVAGHLECDHCRRKFLKKSNLAEHLKKHRHRCPDCPKTFRLRRYLASHVEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTSYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKDSPALDPLNGSDANPLEEPCTIKIENSYTLAKTDRRRVRRTNLKVRAVTMSRCLKTRKPVESVSKSQRREEKIHPRKTRRQTELPLECDFCGKQFDRKSFLASHMKQHRHRCKSCSETFRLRKDLKEHSEQIHGPVLYPCTICEYKSNNRWTLKDHFIRKHTSSFDYSCAVCGKQFKIKNDMVQHAKQMHSNAPPIICTVCGHACKSVPSLKAHMKYRHYKPAYECSLCKRCMTTQSNLEQHLLWHKRKEKVVCPTCGKTFGQKRDLDLHLRIHEGIRPFSCPVCGKKFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPPLPVISIRKIIADFTRGLNDPAVDKKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00220718;
- 90% Identity
- iTF_00982423;
- 80% Identity
- -