Xvio010250.2
Basic Information
- Insect
- Xylocopa violacea
- Gene Symbol
- -
- Assembly
- GCA_963969225.1
- Location
- CAXAJV010000014.1:17169301-17177273[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0015 0.12 13.0 0.3 2 23 204 226 203 226 0.91 2 27 0.63 51 4.8 0.3 1 23 238 261 238 261 0.95 3 27 0.07 5.6 7.8 3.5 1 23 274 297 274 297 0.93 4 27 0.00025 0.02 15.5 5.8 1 23 303 325 303 326 0.95 5 27 0.011 0.88 10.3 0.4 3 23 333 354 331 354 0.94 6 27 0.0012 0.1 13.3 1.5 1 23 359 382 359 382 0.98 7 27 5.6e-07 4.5e-05 23.8 0.4 2 23 389 410 388 410 0.96 8 27 4.7e-06 0.00038 20.9 1.3 1 23 416 438 416 438 0.97 9 27 6.1e-05 0.0049 17.4 1.0 1 23 444 466 444 466 0.98 10 27 0.00054 0.044 14.4 3.0 2 23 582 603 581 603 0.97 11 27 7.7e-05 0.0062 17.1 1.8 1 23 605 628 605 628 0.96 12 27 0.0048 0.39 11.4 0.9 1 23 633 656 633 656 0.96 13 27 0.00054 0.044 14.4 2.2 1 23 662 685 662 685 0.95 14 27 0.002 0.16 12.6 2.0 2 23 692 714 691 714 0.95 15 27 0.0075 0.61 10.8 0.3 1 23 719 741 719 741 0.96 16 27 0.0012 0.095 13.4 0.5 3 23 749 768 748 768 0.98 17 27 9.6e-06 0.00078 19.9 0.1 1 23 774 796 774 796 0.97 18 27 0.00052 0.043 14.5 0.8 1 23 802 824 802 824 0.97 19 27 2e-05 0.0016 18.9 2.4 1 23 943 965 943 965 0.98 20 27 0.0093 0.75 10.5 2.4 1 23 967 990 967 990 0.90 21 27 0.033 2.7 8.8 1.0 1 23 995 1018 995 1018 0.91 22 27 0.0018 0.15 12.7 1.4 1 23 1024 1047 1024 1047 0.95 23 27 0.00032 0.026 15.1 0.6 3 23 1055 1076 1053 1076 0.95 24 27 0.0017 0.13 12.9 2.2 1 23 1081 1103 1081 1103 0.97 25 27 1e-05 0.00081 19.9 0.1 2 23 1110 1131 1109 1131 0.97 26 27 3.5e-05 0.0028 18.2 0.1 1 23 1137 1159 1137 1159 0.97 27 27 0.0012 0.1 13.3 1.5 1 23 1165 1187 1165 1187 0.98
Sequence Information
- Coding Sequence
- ATGAAAAAATGGCAGATCCTGGAGTTCGACGGAAAGCCGTATTACGCGTTTGTACCTGAAGGCGACACGCCGTTGGCCGACGAGGACATACCCGAGCAGATAGACGAGACGGGGAACGAGGATGAGAAGCAGGACCTCGTCAAGGTCGAGTGTCTGTACGGCAACGACGAGGACCTGCAGTACGACTCCAGCGACGAGAAACTGTACGAGGAGGAGCACCTCCTGAACGGAAGCTCCGAGCAGAgggaagaggaggaggacgTTAAGCCGATCATCTTGAACGGGACCATCGACGGTGAGAACGACAAGACGATAGGGGATCTGTACCAGGTGAAGGTTCAGGGTAGCATGGTTACCATAGAGAAGCTGACGTCCACCGAAGTGGAGGACGGGAAGGAAGTGGTGGAGTACCAGCAAGAGGAGCAGGAGGAGCCGGAAGTGTACAACGATCAAGAGCAGCTGGAGCAGGTCGATCAGGAGGATCAAGGGGATCAGGATCAGGTGGAGCAGGTGGAATATCTGGAGGAGGAGATTCTAGAGTCGGCCAACAACCACGCGACCCCGACGAAGACCCGCAGAAAGGTCTCCCGAAATTCGGGTGGAGCGCTGAAGTGTAAAGTCTGCTCGGAGATGTTCAGCTCGGCCATCTCGTTCAGGAAGCACGTCGCGTGGACGCACAAGAAGAAGGTGTGCATACAGGAGGACGGGGCGTACATATGCGCGGTCTGCGACTACAGGACACTGAAGAAGAGCCTGTTCGCGGCGCACTTGGAACGGAAACACGAAACGTGGTCTCGAAAACGTCCGAACAACATGCTGTTCCCGTGCGCCGCCTGCGGGTTCGTCTGCAGATCGAAGCACTCGTTGCAGTCGCACTTCATCAGAAAGCACACGGACCGGTACGAGCACCAGTGCAAGTTCTGCCCGAAGAAGTTCAAGGTGAAAGGCGACCTGACAAACCACGTGCGGTTCCATCACAAGGAGAAGCCGATCAACTGCGACGTGTGCGGGAAATTGTGCCAAAACAGCGGCTCCCTCTACGTGCACCAGAAATGGGCGCATTACAAGCCGAAATACGAGTGCCACATATGCAAGAGGCGCATGGTCACGCAGGAGAACCTGGACCAGCATCTGCTGACGCAGCACGAGAAGAGGGAGAAGATCGTATGCGCCGAGTGCGGGAAGACGTTCACGAAGAAGGACTCGTTCAAGAGGCACATGGCGGTGCACACTGGGTGCAAGCCACATTCCTGTTTGATTTGCAACAAACCGTTCGCGAGGAGATCCCAGCTGCGTCAACATTTGCTCATCCACACGGGGAAGAGGCCGTTCGTTTGCGACATCTGCGGCAAGGCGTTCACGCAGAAGCCCGGGCTGATTTGCCACAGAAAAACGCACCCTGGCCCTCACCCGCCGTTGCCCGTGATGCCAATCGCGGACATCGTGAAAGAGTTCACGGAGGGGTACGTGCAGGAGATAAACGCCCGCGAGAACGAGGAAAGGATCGAGGAGGAAGCGATTCTAGACCCTCTGAGCGAAGAATTCAAGCCTGATTCCCAGTCGGACTCGCCGCTGGACTTCCCCGAGGGTTACGTAAACTGGATCGTGAAAGAGAGCTTCGACGCGGTGCCCGCGAACCAAGACGAGGGCAACGCGAAGAGATCGCAAGACACAAACTCCAGGCTACCCCTTCGAACCAGCCCAGGTCAGCAGTCGAAGCAGAGGAGTCGAGTCGTTCGCTTGGAGTGCGACCACTGCCAGCGCAAGTTCCTCAGGAAGAGCAACCTCGCGGAGCACCTGAAGAAGCACAAGCACAAGTGTCCCGACTGTCCAAAGACCTTCAGGCTCCGCAGATACCTGGCCTCTCACACGGAGAAGATCCATCGGCGCCAAGTGTACGACTGCAGCGTCTGCGAGTACAAGAGCAACAACAAGGGCACCCTGAAGAACCACTACATACGCCTGCACACGACCAGCTACAACTTCGCCTGCGACACCTGCGGCAAGCAGTTCAAGATCAAGAAGGCCCTGAACCATCACGTGAAACAGAACCACAGCGACGCGCCGCCCATCGTCTGCGACGTGTGCGGCCATTTCAGCAAGAACCTGCACGCGTTGAAGGCGCACATGAAGTACAGACACTACAAGCCCGAGTTCGTCTGCCGGATCTGCAGGAGAGGCATGACGACCCAGGAGAACCTCGAGCAGCATCTCACCTGGCACGAGACCAGGGAGAAAGTGTTGTGCCCCACGTGCGGGAAAAGGTTCCGTGGCCGCGACCTCGACTCGCACATGCGTGTGCACACGGGCGTCAAACCCTTTCCCTGTCCCGTCTGCGGGAAGTCGTTCAGACGGCAAACCGCCCAGGAACAGCACGTGCTCATCCACACTGGGAAGAGGCCGTACGTCTGCGACATCTGCGGACAGACGTTCGCGCAGAAACCGGGACTGATCTGCCACAGGAAACGGCATCCTGGTCCGCTGCCGCCATTGCCCGTCGTCTCCATCAAGAACATCGTCACGGAGTTCACGAAGGATTCCCCTGCGATGGATCCGCTGAACGGTAGCGACGTGAACCCTCTGGACGAGTCTTGCGTCCTCGCGATGGAGAACTCGTTCACGTTGGCCAAGAAGGAGCAGCGTCGACAAAGGGAGAGAGTCAGGAGGTTGAATTTAAAAAATCGCATGCTAGCGTCTCGTGGCTTCAAAACGAAGAGATCCGCTGAAGCCAGCAAACCTGCCCAGTCGAAGGTGCCGATCGAGGCGAAGAAACCCGTTGAGACGAGACCCACCGAGAGGAAGAGACCAAAGAGGCAAACGGAACTGTTCGAGTGCGATTTCTGCAACAAACAGTTCAACCGGAAGTCGTTCCTGGCGTCGCACATGAACCAGCACAGACACCGCTGCGAGTCCTGCGACCAGACGTTCAGACTGCGAAAAGACTTGAAGCAGCACTCGGAACAGGTCCACGGTCCGGTCTTGTTCCCGTGCAGCATCTGCGAGTACAAAAGCACCAACAGGTGGACGCTGAAGGACCATTTCGTTCGCAGGCACACCAGCAGCTTCGACTATTCCTGCTCGGTTTGCGGGAAGAAGTTCAAGATCAGGAACGACATGGTCCAGCACAAGAAGCAAATGCACAGCACGGCGCCGCCCATTATTTGCACCGTTTGCGGCTACGCGTGCAGGAGCCTGCCGTCCCTGAGGGCGCACATGAAGTACAAGCACAACAAGCCCGCGTACGAGTGCAGCCTGTGCAAACGTTGCATGACGACGCAGAACAACCTGGAGCAGCACTTGTTGTGGCACAAGAGGAAGGAGAAGGTGGTCTGCCCGACTTGCGGCAAGACCTTCGGCCAGAAGAGGGACCTGGACCTCCATCTGAGGATCCACGAGGGTATCAGGCCGTACGCCTGTCCCGTTTGCGGTAAAAGGTTCCCGAGGAGGACCGCTCAGGAGCAACACATACTGATACACACTGGCCAGAGGCCGTACACTTGTGATATATGCGGGCAGAAGTTCGCCCAGAAACCAGGACTGATCTGCCACAGGAAGCGGCACCCGGGACCCCTGCCACCGCTTCCTGTGATCTCCATCAGGAAGCTTATCATGGACTTCACGCAAAATCTGAGCGACGCGACAGTGGAGAAAAAGGAGACTTAG
- Protein Sequence
- MKKWQILEFDGKPYYAFVPEGDTPLADEDIPEQIDETGNEDEKQDLVKVECLYGNDEDLQYDSSDEKLYEEEHLLNGSSEQREEEEDVKPIILNGTIDGENDKTIGDLYQVKVQGSMVTIEKLTSTEVEDGKEVVEYQQEEQEEPEVYNDQEQLEQVDQEDQGDQDQVEQVEYLEEEILESANNHATPTKTRRKVSRNSGGALKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPINCDVCGKLCQNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARENEERIEEEAILDPLSEEFKPDSQSDSPLDFPEGYVNWIVKESFDAVPANQDEGNAKRSQDTNSRLPLRTSPGQQSKQRSRVVRLECDHCQRKFLRKSNLAEHLKKHKHKCPDCPKTFRLRRYLASHTEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTSYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQTFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKDSPAMDPLNGSDVNPLDESCVLAMENSFTLAKKEQRRQRERVRRLNLKNRMLASRGFKTKRSAEASKPAQSKVPIEAKKPVETRPTERKRPKRQTELFECDFCNKQFNRKSFLASHMNQHRHRCESCDQTFRLRKDLKQHSEQVHGPVLFPCSICEYKSTNRWTLKDHFVRRHTSSFDYSCSVCGKKFKIRNDMVQHKKQMHSTAPPIICTVCGYACRSLPSLRAHMKYKHNKPAYECSLCKRCMTTQNNLEQHLLWHKRKEKVVCPTCGKTFGQKRDLDLHLRIHEGIRPYACPVCGKRFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPPLPVISIRKLIMDFTQNLSDATVEKKET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00220718;
- 90% Identity
- -
- 80% Identity
- -