Bbay027621.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493268.1:73734072-73744096[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.9 6.4e+02 2.0 0.5 2 23 415 437 414 437 0.91 2 15 0.035 2.9 9.4 0.1 6 23 447 464 447 464 0.99 3 15 4.5e-05 0.0036 18.5 3.6 1 23 470 492 470 492 0.99 4 15 3.3e-05 0.0027 18.9 2.9 1 23 505 528 505 528 0.92 5 15 3.3e-05 0.0027 18.9 2.0 1 23 536 559 536 559 0.98 6 15 3.4e-05 0.0027 18.9 2.1 3 23 567 588 565 588 0.92 7 15 0.029 2.4 9.6 0.4 2 23 600 622 599 622 0.96 8 15 0.00068 0.055 14.8 3.4 1 23 629 652 629 652 0.93 9 15 3.4e-06 0.00027 22.0 0.7 1 23 658 680 658 680 0.98 10 15 0.00019 0.015 16.5 1.3 1 23 686 709 686 709 0.97 11 15 0.017 1.4 10.3 1.1 3 23 790 811 789 811 0.89 12 15 0.0095 0.77 11.2 1.2 2 23 820 842 820 842 0.95 13 15 0.00018 0.015 16.6 2.9 1 23 849 872 849 872 0.93 14 15 7.2e-06 0.00059 21.0 1.8 1 23 878 900 878 900 0.98 15 15 1.8e-05 0.0015 19.7 0.9 1 23 906 929 906 929 0.97
Sequence Information
- Coding Sequence
- ATGGTGGTTAAATGCCTGTTATGCTTAGAATATCCAACGACACCGGGtccaaaatttttagaaatatttggaGAAGAAGGCTTACGTCTAGATATAAGTGcgattattaacaaatatttttggttaaagACAAATAAGAACTGTGAAGATgtacaacaaatatgtatgacATGTTGGGAAGTGTTAAGAGATTTCCATATATTATATCAAAGGGTAGAGGAAGTCCATAAACATATAGGAGTCAAGACTATAATATTAGACGATCCGCTGCCTCAAGATGTCATGCTCAAATCTGAAGATGATCCCTCTATGGCCCAAGATCCCATTATGGGAGATAATGGTATGGGTGATTCCATATTTGACCCGGAAGTGAAGGTTGAGGTACACGATTTAGATTTGTTGCCACAAATAGAAATACTAGAGACTGCTAATGTATCCGAGAGAGGGGTGAGATCAAGTCGTCGTGGACGTCCTCCCGCCAGGGATCAAAGTCCAAAGGTATCCACCAAACGTATTAAGAAAGAACAATCTCCTGCGGCAGATGCAACTTTAGATGTTTTCGCTTCAAACGAAAATCTGGCCAGAGATAATGTAAATGAATCTGGGTCATTGGAAGACATAAACTATGCATTACTAACAAACTCATTGGATAAATCAGACAAAGATGAAGGCAGCAGTAAGAGAAGAGGGAGACCCCGGAAAACAGataatgaaaaaactaaaaCCACTACGTCGCGAGTCAAACGCTCAAAGAAACAACAGCTGCCGGCAACGGAAACGGCTATCAAAAACGAAAAAGATGTGGAAGATCAACCATCCTGTTCAACAGCGCAACAGACCAATGAAGACGATGCAACGGAGGcgaaaattaaaactgaaaattctACAGACGAACAGAACTTTGATGGTTTTGCCATTGCTGCTGAACATTTCGACGATGATGATGCCTATGCTCAAGACGACTACGATGATGATAACGACAACTACCAGAAAGACTCTGATGATACCTCCAACTCTGAGTCAGAATCAGATGCTTCAAACGTCTCAGACTGGGGCGAGAATAAAAAGAAGAAGGAAAAGTTTGCTGTTATCATGAAAAAGGAACGCAATGTccccaaaaaatataaaaagagagAAAAGCCCTTGGTGGAACCAAAACGTATGAGCCGCGAAGAAATCGAAGCCCGACAAGCCCAGCAGGCCGAATATGATAACATTATaacgaaattttttgaaaaaatccgTTGTCCTAAATGTGAACTTCTGGTCCATACATTTGGAGAAATGCGTGCACATTTCCGTTTGGATCACAACGATGATCATGGTTTTGTCACATGTTGTGGTCGACGTTTTGCTACACGCAAATTTCTGGCCGAACACATACTGGTTCATTACAATCCCGAACATTTCAAGTGCAAAACATGTGATAAGGTCTGTCGTGATTCTACGCAGCTGGAGAGTCACGAACAGACACACTTACCCAATCCACCTCCatcgaaatacaaaaaaacgTTCCAGTGTGAAAAATGCTCAAAGACATTTTCCTCCAAAGCTTCGTTCGAACATCACATGGTGGCGAAACATGTACCACGAGAAGAATTCAAATTTGAATGTCCTGAATGTAAGAAAAAatGTCCGACTGAAACAAAACTGAAAGATCACATGCGCAGTGTACACGATCCCCAGAGGACGGTGATCTGTGATAAATGTgggaaaacatttaaaagtacCTACAGTCTTAAAAAACATCACGAACTGGAGCATTCGGATGTACCAAAACCAGCCCCCATTCCTCAGCAATGTGAAATTTGTGGTGCCTGGCTGAGGCACTTGTCGGGCCTAAAGCAACACATGAAAAACATACACGAGGGTGTGCAGACAGAACATCGTTGTCAGATTTGCAATAAAGTCTCTTCAACAGCCAGAGCTCTCAAGCGCCACATTTATCACAATCATGAGTGTATAAGGAAATTCCAGTGCACCATGTGTGATAAGGCATTTAAAAGGGCCCAGGATTTAAGgGAGCATACATCTGTTCATACAGGCGAGGTGTTGTATACATGCCCTAATTGCCCCATGACCTTCTTTTCGAATGCCAATATGTATAAACATCGTCAACGTTTGCATCGAGCCGAATGGGAGGCAGATCGTAGTAAACCTATACCACCAAATATTATGAAACAAGCTAAACAGGGTAGTaagtttgttaaaacaaaacgtGCTCCCGGCGAAACTACACCCTCTCATTTGGCAACACCCATGCCCATCATACCACCATCTGCAGTATTAAATCCTCAAATATTATGGCCCTCCAAAGCAAAACTGCGCAAACACATGTATTGTCATGACACAAATAGACAAAAAATATGCGATCAATGCGGTAAAACATTTGCCTGCAATTCCAGTATGCGAAAACATGTCGATGCCGAACATTCCGAAGTTAAGCCGGAACCAGAACAATGTAAAATTTGCAATACATGGTATCGCAACTTGTCTGGCTTGAGGACGCACATGAAGTTCATGCATGAGAATATTGGCGGCGAACATCGTTGTCACATCTGCAATAAAGTGTCGACAAATGCACGAGCTCTAAGAAGGCACATTTATTTGAATCATGAATGTGAACGAAAATTCAAGTGTCACATGTGTGAGAAAGCCTTTAAACGAGAACAAGATTTAcgcGAACACATCTCTGTGCATACTGGCGAGGCATTATACACTTGTCCCAATTGCCCCATGACATTTTCCTCCAGCGCCAATATGTATAAACATCGTCAACGTTTACATAAGGCTGAATATGCGGCTCACAAACAACAACCAATGGCattgaatattataaaacaagCCAAATCTGTACCGAATACGGTGCGCACTAAAAGACGCATGATTGTTGAACCTCCTCATTCAGCTGAAATTGTTATGCCACCAAATTCCACTTTGTTAAATCCCCAGCTTGTCATAACATCACAATATGCTGCAATGGCACCAAATTTGACCAAACTGCACGATTGA
- Protein Sequence
- MVVKCLLCLEYPTTPGPKFLEIFGEEGLRLDISAIINKYFWLKTNKNCEDVQQICMTCWEVLRDFHILYQRVEEVHKHIGVKTIILDDPLPQDVMLKSEDDPSMAQDPIMGDNGMGDSIFDPEVKVEVHDLDLLPQIEILETANVSERGVRSSRRGRPPARDQSPKVSTKRIKKEQSPAADATLDVFASNENLARDNVNESGSLEDINYALLTNSLDKSDKDEGSSKRRGRPRKTDNEKTKTTTSRVKRSKKQQLPATETAIKNEKDVEDQPSCSTAQQTNEDDATEAKIKTENSTDEQNFDGFAIAAEHFDDDDAYAQDDYDDDNDNYQKDSDDTSNSESESDASNVSDWGENKKKKEKFAVIMKKERNVPKKYKKREKPLVEPKRMSREEIEARQAQQAEYDNIITKFFEKIRCPKCELLVHTFGEMRAHFRLDHNDDHGFVTCCGRRFATRKFLAEHILVHYNPEHFKCKTCDKVCRDSTQLESHEQTHLPNPPPSKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKTFKSTYSLKKHHELEHSDVPKPAPIPQQCEICGAWLRHLSGLKQHMKNIHEGVQTEHRCQICNKVSSTARALKRHIYHNHECIRKFQCTMCDKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKFVKTKRAPGETTPSHLATPMPIIPPSAVLNPQILWPSKAKLRKHMYCHDTNRQKICDQCGKTFACNSSMRKHVDAEHSEVKPEPEQCKICNTWYRNLSGLRTHMKFMHENIGGEHRCHICNKVSTNARALRRHIYLNHECERKFKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPMALNIIKQAKSVPNTVRTKRRMIVEPPHSAEIVMPPNSTLLNPQLVITSQYAAMAPNLTKLHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01374273; iTF_01201819; iTF_00371449; iTF_01397723; iTF_00655464; iTF_01109487; iTF_00900828;
- 90% Identity
- -
- 80% Identity
- -