Cimp097613.1
Basic Information
- Insect
- Cordilura impudica
- Gene Symbol
- -
- Assembly
- GCA_963682025.1
- Location
- OY821521.1:51344878-51358477[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.3 1.3e+03 2.9 0.4 2 23 420 442 419 442 0.93 2 15 0.036 11 9.4 0.1 6 23 452 469 452 469 0.99 3 15 2.2e-05 0.0066 19.5 3.2 1 23 475 497 475 497 0.98 4 15 3.3e-05 0.01 18.9 2.9 1 23 510 533 510 533 0.92 5 15 6.3e-06 0.0019 21.2 0.7 1 23 541 564 541 564 0.98 6 15 0.00011 0.032 17.4 4.0 3 23 572 593 570 593 0.92 7 15 0.014 4.2 10.7 1.1 1 23 604 627 604 627 0.96 8 15 0.00098 0.3 14.3 3.5 2 23 635 657 635 657 0.93 9 15 1.2e-05 0.0037 20.3 0.7 1 23 663 685 663 685 0.98 10 15 0.0002 0.06 16.5 1.3 1 23 691 714 691 714 0.97 11 15 0.014 4.2 10.7 1.3 2 23 777 799 776 799 0.89 12 15 1.1 3.4e+02 4.7 1.5 2 23 808 830 807 830 0.91 13 15 0.00018 0.056 16.6 2.9 1 23 837 860 837 860 0.93 14 15 5.1e-06 0.0016 21.5 1.7 1 23 866 888 866 888 0.98 15 15 1.9e-05 0.0058 19.7 0.9 1 23 894 917 894 917 0.97
Sequence Information
- Coding Sequence
- atgGTGGTTAAATGCCTACTATGTTTAGAATATCCAACAACGCCGGGTCcgaaatttttggaaatatttggTGATGATGGCTTAAGATTAGATATAAGTTcgatcattaataaacatttttggtTGAAGATAAACAGGAATGGTGACAGTATACAACAGATCTGTTTGACTTGCTGGGAAGTGGTTAGAGACTTTCACATACTTTACCAAAGAGTAGAAGAAGTTCATAAACACTTCGAGTTAAAGTCTATAGTTATAGATGATCCCCTGCCTCAGGATGTTATGCTTAAGTCGGAAGATGATCCCTCTATGGCTCAAGATCCCATTATGGGTGATAATTGTTTGGGGGATTCTCTTTTTGATTCTGAAGTTAAAGTTGAGGTGCATGATTTGGATTTATTACCACAAATTGAAATTCTAGAAACTGAAGATGCTAATATAACTGAACGAACGACCAGATCATACCGACGAGGTCGCCAACCATGCAACCGGGATCAAAGTCCAAAGGTGTCTACAAAACGTATTAAGAAAGAACAATCGCCTACTACTGataaagatttaaatttgaacGTTTTTTCCGAAAATGAGCCTTTTATTAAAGACACCTTAAATACATCAGGTTCGTTAGAGGATATTAACAAATCGTTATTATCAAATTCCCTAGATGTGAGAGAAGATAATGGTAATGGTAAAAAGAGAGGTAGGCCGCGGAAAGGAGAATTGGATAAATCTAAAACTGTTACACCACGTACAAAACGTTCCAAAAAGCATCAGCAACAAGAACAAGCaacgacaaaaattaaaaatgagaaagacGAAGAAGGTGAACCATCATGTTCGTCAGCACAACCTTGCAGTACAGTAGTGGcacaaattaaaactgaaaaatctgCCGATGAACCAACTACCTTTGAAGCGTTTCCTACTGCCGATGATCATTTTGACGATGCATATGCTCAAGATGACGACGACGATGACGACGATAATGACAATGATAATTTCCAAAAGCCCTCCGATGAATCCTCAAATTTAGATTCAGGTTCAGAGGATTCAAATGCCTCCGATTGGGGCGACGAACAAACTAAGAAAGAAAAATATGCTGTCATTAAGAAAAAAGAACGCAATACTCCTAAAAAATATAAGAAACGTGAAAAGCCGGCAGTCGAACCAAAACGAATGACACGTGAAGAAATTGAAGCCCGTCAGGCACAACAGGCCGAATACGACAATATCATTACAaagttctttgaaaaaattcgttGTCCAAAATGTGAATTGCTCGTTCATACATTCGGTGAAATGCGTGCTCATTTTCGTATTGATCACAATGATGATCATGGTTTTGTTGAATGTTGTGGTCGTCGTTTTGCTACACGCAAATTCCTCGCCGAACATATATTAGTGCATTACAATCCCGAACATTTCAAATGTAAAACTTGTGATAAGGTCTGTCGTGATTCTTCGCAACTGGAATCCCACGAACAATCACATTTACCTAATCCTCCAgcttcgaaatataaaaaaacgttcCAATGTGAAAAGTGTTCGAAGACATTTTCCTCGAAAGCTTCGTTCGAACATCATATGGTTGCTAAACATGTTCCACGTgaagaatttaaatttgaatGTCCTGAATGTAAGAAAAAATATCCTACTGAAACAAAACTAAAAGATCACATGCGTAGCGTGCATGATCCACAAAGAACGGTTATATGTGATAAATGTGGTAAAACATTCAAGACCACGCACAGTCTTAAAAAACATCACGAACTCGAACATTCGGATATGCCAAAACCAGCGCCAATACCACACCAATGTGAAATATGTGGTGCGTGGTTGCGACATTTATCTGGTCTTAAACAACACATGAAAAATATACACGACGGTGTTCAAACAGAAAATCGTTGTCATATATGTAATAAGGTTTCCTCAACGGCTAGAGCCCTGAAAAGGCATATCTATCATAATCATGAATGTATTCGAAAATTCCAATGTACCATGTGTGAGAAGGCATTTAAAAGGGCCCAAGATTTAAGAGAACATACATCCGTTCACACTGGTGAGGTGTTATATACCTGCCCCAATTGTCCCATGACCTTCTTTTCCAATGCCAATATGTATAAACATAGACAGCGATTACATCGTGCTGAATGGGAAGCAGATCGTAGTAAACCTATACCACCCAATATTATGAAACAGGCTAAACAGGGTAGTAAGTTAGTTAAACTAAAACGAGTTCCTGGCGATAGCACACCTTTACACTTGGCaTGGCCCTCTAAAGAAAAACTACGTAAACATATGTACTGTCATGATACAAACAGACAAAAAGTATGTGATCAATGTGGAAAAACATTTGCCTGTAATTCCAGCATGCGCAAACATGTAGATGCCGAACATTCTGAAGTTAAACCAGAACCACAACAATGTAAGATGTGTAATACCTGGTATCGTAATATGTCAGGTTTACGAACGCATAATAAATTTATGCATGAAAATATTGGCGGTGAACATCGATGTCATATCTGCAACAAAGTGTCTACAAATGCTAGAGCTCTACGAAGGCATATCTATTTAAATCATATATGTGAACGTAAATATAAGTGTCATATGTGTGAAAAAGCATTTAAACGCGAGCAGGATTTGAggGAGCATATTTCTGTACATACTGGTGAAGCTTTATACACATGCCCCAATTGTCCCATGACATTTTCTTCTAGTGCTAATATGTATAAACATCGTCAACGTTTGCATAAAGTTGAATATGCAGCTCATAAACAACAGCCAATggctttaaatattattaaacagGCCAAATCTGTACCCAATACAGTACGTACGAAAAGACGTTTGGTTGTAGAACCCGCTCTACCACTACCACAACAAGGTTTTATGCAAACATCATTTTTACCGCCACTTAATTCACAACAAATGCAATATGCTTTGCagccaaattttacaaaaatgcacgaataa
- Protein Sequence
- MVVKCLLCLEYPTTPGPKFLEIFGDDGLRLDISSIINKHFWLKINRNGDSIQQICLTCWEVVRDFHILYQRVEEVHKHFELKSIVIDDPLPQDVMLKSEDDPSMAQDPIMGDNCLGDSLFDSEVKVEVHDLDLLPQIEILETEDANITERTTRSYRRGRQPCNRDQSPKVSTKRIKKEQSPTTDKDLNLNVFSENEPFIKDTLNTSGSLEDINKSLLSNSLDVREDNGNGKKRGRPRKGELDKSKTVTPRTKRSKKHQQQEQATTKIKNEKDEEGEPSCSSAQPCSTVVAQIKTEKSADEPTTFEAFPTADDHFDDAYAQDDDDDDDDNDNDNFQKPSDESSNLDSGSEDSNASDWGDEQTKKEKYAVIKKKERNTPKKYKKREKPAVEPKRMTREEIEARQAQQAEYDNIITKFFEKIRCPKCELLVHTFGEMRAHFRIDHNDDHGFVECCGRRFATRKFLAEHILVHYNPEHFKCKTCDKVCRDSSQLESHEQSHLPNPPASKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKYPTETKLKDHMRSVHDPQRTVICDKCGKTFKTTHSLKKHHELEHSDMPKPAPIPHQCEICGAWLRHLSGLKQHMKNIHDGVQTENRCHICNKVSSTARALKRHIYHNHECIRKFQCTMCEKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKLVKLKRVPGDSTPLHLAWPSKEKLRKHMYCHDTNRQKVCDQCGKTFACNSSMRKHVDAEHSEVKPEPQQCKMCNTWYRNMSGLRTHNKFMHENIGGEHRCHICNKVSTNARALRRHIYLNHICERKYKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKVEYAAHKQQPMALNIIKQAKSVPNTVRTKRRLVVEPALPLPQQGFMQTSFLPPLNSQQMQYALQPNFTKMHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200056;
- 90% Identity
- -
- 80% Identity
- -