Tfer039995.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999967.1:82839971-82853343[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8 9.2e+02 2.0 0.5 2 23 407 429 406 429 0.91 2 15 0.036 4.1 9.4 0.1 6 23 439 456 439 456 0.99 3 15 0.00013 0.015 17.1 2.7 1 23 462 484 462 484 0.98 4 15 3.3e-05 0.0038 18.9 2.9 1 23 497 520 497 520 0.92 5 15 3.3e-05 0.0038 18.9 2.0 1 23 528 551 528 551 0.98 6 15 3.4e-05 0.0039 18.9 2.1 3 23 559 580 557 580 0.92 7 15 0.082 9.5 8.2 0.3 2 23 592 614 591 614 0.96 8 15 0.001 0.12 14.2 6.2 1 23 621 644 621 644 0.93 9 15 3.4e-06 0.00039 22.0 0.7 1 23 650 672 650 672 0.98 10 15 0.00019 0.022 16.5 1.3 1 23 678 701 678 701 0.97 11 15 0.014 1.6 10.7 1.0 3 23 787 808 786 808 0.89 12 15 0.0078 0.9 11.5 1.2 2 23 817 839 816 839 0.95 13 15 0.00019 0.021 16.6 1.4 1 23 846 869 846 869 0.93 14 15 5e-06 0.00058 21.5 1.7 1 23 875 897 875 897 0.98 15 15 1.9e-05 0.0021 19.7 0.9 1 23 903 926 903 926 0.97
Sequence Information
- Coding Sequence
- atggTGGTTAAATGTATACTTTGCTTAGAAAATCCTACAATACCGGGTccaaaatttttagaaatatttggAGAAGATGGTTTACGTCTAGATATAAGTTCGattataaacaaacatttttggttAAAGGCAAACAGGAATAGCGAAGATGTTCAACAAATATGTATGACTTGCTGGGAAGTGGTAAGAGATTTTCACATACTCTATCAAAGAGTAGAGGAAGTGCACAAACATATAGGAGTTAAGACGATAGTATTGGATGATCCTCTACCTCAGGATGTTATGCTTAAGTCGGAAGATGACACTTCTATGGCGCAAGACCCCATTATGGGAGATAATGGTATTAGTGATTCTATATTCGACCCAGAAGTAAAAGTTGAAGTACATGATTTGGATTTGTTGCCACAAATAGAAATATTAGAGACTGCAAACGTATCCGAAAGAAGTGTGAGATCAAGTCGGCGTGGACGCCCTCCAGCAAGGGAACATAGCCCAAAAATATCGACAAAACGCATCAAAAAAGAACAATCTCCTGCAGCTGATACAACTTTAGATGTTTTAGGTTCCACTGAAAATCTCAAAAAGGACGACTTAAATGTTTCTACTTCTTTAGAAGGCAAGACAAATTCTGTTGATAAAGATGAAAGTAGTAATAAAAGAAGGGGAAGACCTCGAAAATCagatatggaaaaatataagcCAATTACGACTCGTATAAAGCGATCAAAAAAACAATCGCAGAATTCGTCGGAGAcggaaataaaaaatgaaaaggaTGAGGAAGATCAACCATCGTGTTCAACTGCTACACCGGGCACCTCCGCAACAGCAgagcagaaaattaaaactgAAAGTCCTGCGCAGGAACAACATTCAAATGATTTCGTTGTTGCCCCTCAACATTTTGATGACGATGATGCCTATGCACATGATGACTACGATGACGACAACGATAATAACTATGCTAAGGACTCTGATACATCCTCAAGCTCTGAATCGGAGGCAGAAGAATCTGATGGTTCAGACTGGGGTGAAGGAAAAAAGAAGAAGGAAAAGTTTGctgttattatgaaaaaagaacGGAATGTtcctaaaaaatataagaaaagagAAAAGCCGTCTGTAGAACCAAAACGCATGAGCCGTGAAGAAATTGAAGCTCGCCAAGCACAGCAGGCTGAATATGATTCTATCAttacaaaattctttgaaaaaatacgtTGTCCCAAGTGTGAACTTTTAGTTCATACGTTTGGTGAAATGAGAGCACATTTCCGTTTGGATCACAACGATGATCATGGCTTTGTGGAATGTTGTGGTCGTCGATTTGCTACTCGCAAGTTTTTAGCCGAACACATATTAGTCCATTACAATCCAGAGCATTTCAAGTGCAAAACATGTGATAAGGTGTGTCGTGATTCTACCCAATTAGAAGGCCATGAGCAAACTCACTTACCCAATCCACCTccatcaaaatacaaaaaaacgttccagtgtgaaaaatgttcaaaaacatTTTCCTCAAAAGCTTCTTTTGAACATCACATGGTTGCGAAACATGTACCCAGAgaagaattcaaatttgaatGCCCTGAATGCAAGAAAAAatgtcCAACTGAAACAAAACTGAAAGATCACATGCGCAGTGTACACGATCCGCAAAGAACGGTGATATGTGATAAATGtggaaaaacatttaaaagtaCCTACAGTCTCAAAAAACATCACGAACTGGAACATTCGGATATACCCAAGCCAGCTCCCATTCCTCAGCAGTGCGAAATTTGTGGCGCTTGGTTAAGGCACGTGTCCGGTTTAAAACAACACATGAAAAATATACATGAGTCCGTGCAGACTGAACATCGTTGTCACATCTGCAATAAGGTATCATCCACTTCTAGAGCTCTCAAAAGACATATTTATCATAATCATGAGTGTGTTAGAAAGTTCCAGTGTACCATGTGTGATAAGGCATTCAAAAGAGCTCAAGATTTAAGGGAGCATACTTCCGTTCACACAGGCGAAGTGTTATATACTTGTCCAAATTGTCCCATGACTTTCTTTTCGAATGCCAATATGTATAAACACCGCCAGCGCTTACATCGTGCCGAATGGGAGGCCGATCGGAGTAAACCCATACCGCCAAATATCATGAAACAAGCTAAACAAGGCagtaaatttgttaaaataaagcGTTCTCCTGGTGAAACTACGCCATCTCAGTTGATACCTCCTTTGCCCATTATACCGCCATCAACAAACGCTCTTCACACTGTTTTAAATCCTCAAATATTATGGCCATCTAAAGCTAAATTgcaaaaacacatgtattgtCATGATACAAATAGGCAAAAAATATGCGATCAATGTGGTAAGGCATTTTCCTGCAATTCCAGCATGCGCAAACATGTCGATGCTGAACATTCCGAATTGAAACCAGAGCCGCAACAGTGTAAAATATGCAATACTTGGTATCGAAATTTGTCTGGCTTGAGAACGCACATGAAGTTTATGCATGAAAACATTGGCGGGGAACATCGTTGCCAGATATGTAATAAGGTGTCAACAAATGCCAGAGCGTTGAGAAGACACATTTATTTGAATCACGAATGTGAACGAAAATATAAGTGCCACATGTGTGAGAAGGCTTTTAAACGGGAGCAAGATTTGAGAGAACATATATCTGTGCATACTGGAGAGGCATTGTACACGTGTCCCAATTGTCCTATGACATTCTCCTCTAGCGCTAATATGTACAAACATCGACAGCGCCTGCACAAAGCCGAATATGCAGCTCATAAGCAACAGCCATTGGCattgaatataataaaacaagCTAAATCCGTACCGAATACTGTGCGTACTAAAAGGCGTATGATTGTGGAACCTCCATCAGCTGACATTGTTGTGCCTCCCacctcaattttattaaatcccCACCTCATTTTAACATCACAACAATACCTtccaaatttaacaaaattacaagattga
- Protein Sequence
- MVVKCILCLENPTIPGPKFLEIFGEDGLRLDISSIINKHFWLKANRNSEDVQQICMTCWEVVRDFHILYQRVEEVHKHIGVKTIVLDDPLPQDVMLKSEDDTSMAQDPIMGDNGISDSIFDPEVKVEVHDLDLLPQIEILETANVSERSVRSSRRGRPPAREHSPKISTKRIKKEQSPAADTTLDVLGSTENLKKDDLNVSTSLEGKTNSVDKDESSNKRRGRPRKSDMEKYKPITTRIKRSKKQSQNSSETEIKNEKDEEDQPSCSTATPGTSATAEQKIKTESPAQEQHSNDFVVAPQHFDDDDAYAHDDYDDDNDNNYAKDSDTSSSSESEAEESDGSDWGEGKKKKEKFAVIMKKERNVPKKYKKREKPSVEPKRMSREEIEARQAQQAEYDSIITKFFEKIRCPKCELLVHTFGEMRAHFRLDHNDDHGFVECCGRRFATRKFLAEHILVHYNPEHFKCKTCDKVCRDSTQLEGHEQTHLPNPPPSKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKTFKSTYSLKKHHELEHSDIPKPAPIPQQCEICGAWLRHVSGLKQHMKNIHESVQTEHRCHICNKVSSTSRALKRHIYHNHECVRKFQCTMCDKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKFVKIKRSPGETTPSQLIPPLPIIPPSTNALHTVLNPQILWPSKAKLQKHMYCHDTNRQKICDQCGKAFSCNSSMRKHVDAEHSELKPEPQQCKICNTWYRNLSGLRTHMKFMHENIGGEHRCQICNKVSTNARALRRHIYLNHECERKYKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPLALNIIKQAKSVPNTVRTKRRMIVEPPSADIVVPPTSILLNPHLILTSQQYLPNLTKLQD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200056;
- 90% Identity
- -
- 80% Identity
- -