Lvul023058.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776279.1:10326064-10333743[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.2 8.5e+02 2.0 0.5 2 23 416 438 415 438 0.91 2 15 0.032 3.8 9.4 0.1 6 23 448 465 448 465 0.99 3 15 3.1e-05 0.0037 18.9 2.9 1 23 471 493 471 493 0.99 4 15 3e-05 0.0035 18.9 2.9 1 23 506 529 506 529 0.92 5 15 3e-05 0.0035 18.9 2.0 1 23 537 560 537 560 0.98 6 15 7.8e-05 0.0093 17.6 1.5 3 23 568 589 566 589 0.92 7 15 0.055 6.6 8.6 0.6 2 23 601 623 600 623 0.96 8 15 0.00093 0.11 14.2 6.2 1 23 630 653 630 653 0.93 9 15 3.1e-06 0.00036 22.0 0.7 1 23 659 681 659 681 0.98 10 15 0.00017 0.021 16.5 1.3 1 23 687 710 687 710 0.97 11 15 0.0062 0.73 11.6 1.8 2 23 794 816 793 816 0.89 12 15 0.018 2.1 10.2 1.0 2 23 825 847 824 847 0.95 13 15 0.00017 0.02 16.6 1.4 1 23 854 877 854 877 0.93 14 15 4.5e-06 0.00054 21.5 1.7 1 23 883 905 883 905 0.98 15 15 1.7e-05 0.002 19.7 0.9 1 23 911 934 911 934 0.97
Sequence Information
- Coding Sequence
- atggtggTTAAATGCTTACTTTGCTTAGAAAATCCTACAACACCGGGCccaaaatttttagatatatttgGGGAGGATGGTTTGCGTCTAGATATAAGTGCgattataaataaacatttttggcTGAAGATAAACAGAAATTGTGAAGatgtacaacaaatttgtaTGACATGTTGGGAAGTGTTAAGAGATTTCCACATACTGTATCAAAGGGTAGAGGAAGTCCATAAACATATAGGAGTCAAGACAATAATAGTGTTGGACGATCCGCTACCTGTGGATGTTATGCTTAAGTCTGAAGATGATCCTTCAATGGCACAAGACCCCATTATGAATGATAATTGCATTaatgattctatttttgaccCTGAAGTCAAAGTTGAAGTACATGATTTAGATTTGTTGCCTCAAATTGAAATACTGGAGACTGCTAATGTACCCGAAAGAAATACTAGAACAAGTCGACGTGGTCGACCATCAGCAAGAGAACAAAGCCCAAAAATATCGGCGAAACGTATTAAAAAAGAGCAGTCTCCTGCAGCTGATGCTTTATTAGATATATTTGGTTCGAATGAAAATCTCGAAAGAGATAACGTACATGCTTCTACCTCCTTTGATGACACAAATAAGCTTCTTGTGTCAAATTCTTTCGATAACAAAGATGAAGGAAATGGCAAAAGAAGAGGTAGGCCCAAAAAGTCTGAAGTGGAAAAAGCTAAAATAATAGCGCCGCgtataaaacgtttaaaaaaacATCATCAACCGCTTCCGACGCCCGATAcggaaataaaaaatgaaaatgatgTAGAAGATCAGCCATCGTGCTCAACTGCACAACTTGCCGCAGCGACTGCAGCAGAGGCACCGAACATTAAAACTGAGACAGCAACAGAAGAACAAAATTCAAATGATATTGTTGCCCCAGGTGTTTTGGACGACGATGATGCGTATGCACAAGACGACTACGACGATGATAACGATAATAACTATACCAAGGAATCTGATGCGTCCTCAAATTCTGAATCTGAAGGTGAGGAATGCGATGACTCAGATTGGGGTGAAGATAACAAGAAGAGAGATAAGTTTGCtgttattatgaaaaaagaacgaaatgttcctaaaaaatataagaaaagggAGAAATCTTCAATAGAACCGAAGCGCATGAGTCGCGAAGAAATTGAAGCACGGCAAGCGCAACAAGCAGAATATGATTccataattacaaaattttttgagaaaatacgGTGTCCAAAATGTGAACTATTAGTACATACATTCGGTGAAATGCGTGCGCATTTCCGTTTAGATCACAACGATGATCATGGTTTTGTAGAATGTTGTGGCCGTCGATTTGCCACACGAAAGTTTCTGGCCGAACACATATTAGTTCATTACAATCCTGaacattttaaatgcaaaacatGTGATAAAGTTTGTCGCGACTCTACGCAATTGGAGATCCATGAACAAACCCACTTACCCAATCCACCCCCATCGAAATACAAGAAAACGTTCCAGTGCGAAAAATGTTCGAAAACATTTTCCTCTAAAGCTTCTTTTGAACATCACATGGTAGCAAAGCATGTACCCCGAGAAGAGTTCAAATTTGAATGTCCTGAATGTAAGAAAAAATGTCCAACTGAAACGAAGCTAAAAGATCACATGCGCAGCGTACACGACCCACAGCGTACAGTAATATGTGATAaatgtggaaaaatatttaaaagtaccTATAGTCTTAAAAAACATCACGAACTGGAGCACTCTGATGTACCAAAACCAGCGCCTATTCCTCAACAGTGTGAAATTTGTGGTGCATGGTTAAGGCACTTTTCCGGCTTAAAACAacatatgaaaaatatacacGAATCTGTGCAGACAGAGCATCGTTGTCACATCTGCAACAAAGTATCATCTACATCTAGAGCTCTGAAACGtcatatatatcataatcatgaGTGTGTTAGAAAGTTTCAATGTACCATGTGCGATAAGGCATTTAAGAGAGCACAAGATTTAAGGGAGCATACTTCTGTGCATACAGGCGAAGTGTTATATACCTGTCCAAATTGTCCAATGACTTTCTTTTCGAATGCTAATATGTATAAGCATCGTCAGCGCTTACATCGAGCCGAATGGGAAGCTGATCGGAGTAAGCCAATACCACCAAATATAATGAAGCAAGCCAAACAGGGCAGTAAGTTTGTTAAGCCGAAACGGCCTCCCGGTGAAAGTACACAATCTCAATTGGTAACTCCAATGACTATTATGCCACATTCCGCGGCTGCTCTTCATACTGTTTTAAATCCTCAAATATGGCCTTCTAAAGCTAAACTGCAAAAGCACATGTATTGCCATGATACAAATAGGCAAAAAGTTTGCGATCAGTGTGGTAAGACATTTTCCTGTAATTCAAGCATGCGTAAACATGTCGATGCTGAACATTCCGAATTAAAGCCAGAACCACAACAGTGCAAAATTTGCAATACGTGGTATCGAAACGTGTCTGGTTTGCGAACGCACATGAAATTTATGCATGAAAATATTGGCGGAGAACATCGTTGTCAGATTTGTAATAAGGTGTCAACGAATGCTAGAGCTCTGAGAagacatatttatttgaatcaCGAATGTGAACGGAAGTACAAGTGTCACATGTGCGAGAAGGCTTTTAAACGAGAACAAGATTTGAGGGAACATATTTCTGTACATACTGGGGAGGCATTGTACACTTGCCCTAATTGTCCGATGACGTTTTCCTCAAGTGCCAATATGTATAAACATCGGCAACGCTTACATAAAGCGGAATATGCAGCGCATAAGCAGCAGCCATTAGCATTGAATATAATAAAGCAGGCAAAGTCTGTACCGAATACAGTGCGTACTAAAAGACGCATGATTGTGGAACCCCCGCCAGCTGAAATTGTTGTGAATCCGGCTTCAGTTTTGTTAAATCCTCAGCTTATTTTAACATCACAATATGCGCCAAATTTGGCAAAATTACATGATTGA
- Protein Sequence
- MVVKCLLCLENPTTPGPKFLDIFGEDGLRLDISAIINKHFWLKINRNCEDVQQICMTCWEVLRDFHILYQRVEEVHKHIGVKTIIVLDDPLPVDVMLKSEDDPSMAQDPIMNDNCINDSIFDPEVKVEVHDLDLLPQIEILETANVPERNTRTSRRGRPSAREQSPKISAKRIKKEQSPAADALLDIFGSNENLERDNVHASTSFDDTNKLLVSNSFDNKDEGNGKRRGRPKKSEVEKAKIIAPRIKRLKKHHQPLPTPDTEIKNENDVEDQPSCSTAQLAAATAAEAPNIKTETATEEQNSNDIVAPGVLDDDDAYAQDDYDDDNDNNYTKESDASSNSESEGEECDDSDWGEDNKKRDKFAVIMKKERNVPKKYKKREKSSIEPKRMSREEIEARQAQQAEYDSIITKFFEKIRCPKCELLVHTFGEMRAHFRLDHNDDHGFVECCGRRFATRKFLAEHILVHYNPEHFKCKTCDKVCRDSTQLEIHEQTHLPNPPPSKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKIFKSTYSLKKHHELEHSDVPKPAPIPQQCEICGAWLRHFSGLKQHMKNIHESVQTEHRCHICNKVSSTSRALKRHIYHNHECVRKFQCTMCDKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKFVKPKRPPGESTQSQLVTPMTIMPHSAAALHTVLNPQIWPSKAKLQKHMYCHDTNRQKVCDQCGKTFSCNSSMRKHVDAEHSELKPEPQQCKICNTWYRNVSGLRTHMKFMHENIGGEHRCQICNKVSTNARALRRHIYLNHECERKYKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPLALNIIKQAKSVPNTVRTKRRMIVEPPPAEIVVNPASVLLNPQLILTSQYAPNLAKLHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200056;
- 90% Identity
- -
- 80% Identity
- -