Pmel008546.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000860.1:201845-211363[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.9 2.4e+02 3.1 0.6 2 23 412 434 411 434 0.94 2 15 0.03 2.4 9.4 0.1 6 23 444 461 444 461 0.99 3 15 4.6e-05 0.0037 18.2 3.1 1 23 467 489 467 489 0.98 4 15 2.8e-05 0.0023 18.9 2.9 1 23 502 525 502 525 0.92 5 15 2.8e-05 0.0023 18.9 2.0 1 23 533 556 533 556 0.98 6 15 0.00074 0.06 14.4 1.6 3 23 564 585 562 585 0.92 7 15 0.024 2 9.7 0.5 2 23 597 619 596 619 0.96 8 15 0.00075 0.061 14.4 5.3 1 23 626 649 626 649 0.93 9 15 2.8e-06 0.00023 22.0 0.7 1 23 655 677 655 677 0.98 10 15 0.00016 0.013 16.5 1.3 1 23 683 706 683 706 0.97 11 15 0.015 1.2 10.3 1.1 3 23 791 812 790 812 0.89 12 15 0.016 1.3 10.2 1.3 2 23 821 843 820 843 0.95 13 15 0.0026 0.22 12.7 1.5 1 23 850 873 850 873 0.93 14 15 6.1e-06 0.0005 21.0 1.8 1 23 879 901 879 901 0.98 15 15 1.6e-05 0.0013 19.7 0.9 1 23 907 930 907 930 0.97
Sequence Information
- Coding Sequence
- ATGGTGGTTAAATGCCTGCTATGCTTAGAATATCCAACAATACCGGGTCCAAAATTTTTGGAAATATTTGGTGATGATGGCTTACGTTTAGACATTAGTGCTATTATTAATAAACATTTTTGGTTAAAGACAAACAGGAACTGTGAAGCTGTACAACAGATATGTATGACATGTTGGGAGGTAGTCAGAGATTTTCACATACTTTACCAGAGGGTAGAAGAAGTTCATAAGCATATAGGAGTTAAAACTATAGATTTGGATGATCCACTACCTCAAGATGTAATGCTTAAGTCTGAAGATGATCCATCAACAGCTCAAGATCCCATTATGGGTGATAATGGTATGGGAGATTCTATATTCGATCCGGAAGTAAAGGTTGAGGTGCATGATTTAGATTTGTTACCTCAAATAGAAATATTAGAGACTGCCAATGTATCGGAGAGAGGTGCGAGGTCAAACCGTCGTGGACGCCCTCCCGCAAGAGAACACAGCCCAAAAGTCTCAACAAAACGTATTAAGAAAGAACAATCTCCTGCCACTGATACAAACTTAGATGTTTTCGCTTCAAGTGAAAACCTCGCTAAAGATGGTTTGAACGAATCTGGTTCTTTGGTAAATGATAACTTCTCGCTATTATCAAATTCTTTGGATAAACCAGATAAGGATGAAGGAAGCAGTAAAAAAAGGGGAAGACCACGCAAAAATGATGTTGAAAAAGCTAAACCAACAATGACACGTGCGAAACGCTTAAAAAAACTACAGCCTGCGGTAGAGACTGAAATTAAGGACGAAAAAGACAATGAAGCTCAGCCATCATGTTCATCACAAAATACGACAGCGAACAAAATGGAATCAAAAATTAAAACTGAAAATCCAACACAAGAACACAAATTAGATGATTTCACTCTTGCAACAGAGCAATTTGAAGACGATGATGCCTATGCTCAGGACGACTACGATGATAATGATAATAACTACACTAAAGACTCGGACGAATCCTCAAACTCAGAATCCGAATCAGAAGCATCAGACGGTTCGGAATGGGGTGAGTCCCAAAAAAAGAAGGAAAAGTATGCTGTTATCATGAAAAAAGAACGTAACGTCCCTAAGAAATATAAGAAGAGAGAAAAGCCTGTGGTCGAACCAAAACGCATGAGTCGAGAAGAAATAGAGGGTCGGCAAGCCCAACAGGCCGAATATGATTCAATAATTACAAAATTCTTTGAGAAGATTCGTTGTCCTAAATGTGAACTTTTGGTACACACGTTTGGTGAAATGCGCGCACATTTTCGTATGGATCACAATGATGATCATGGTTTTGTCGAATGTTGTGGTCGCCGTTTTGCAACAAGAAAATTTCTGGCGGAACATATATTGGTTCATTATAATCCTGAACATTTCAAATGTAAAACATGTGATAAAGTCTGCCGCGATTCTACACAACTAGAGAGTCACGAGTTGACACATTTACCCAATCCTCCGGCTTCGAAATACAAAAAAACGTTCCAGTGTGAAAAATGTTCAAAGACATTCTCTTCGAAAGCTTCGTTCGAGCATCACATGGTGGCAAAACATGTACCCCGAGAAGAATTTAAATTTGAATGCCCAGAGTGCAAGAAAAAATGTCCTACTGAAACGAAACTAAAAGATCATATGCGTAGTGTACATGATCCCCAGAGAACGGTCATAtgcgataaatgtggcaaaacgcttaaaagtacatacagccttaaaaaacatcacgaactggaacattcagatgttcctaaaccagtgcccattcctcaacaatgtgaaatctgtggtgcttggttaaaacatttgtctggtctaaaacaacatatgaaaaatatacatgagggtgtacaaacagaacatcgttgtcatatttgcaacaaggtttcttctacagctcgagctcttaaacgacacatttatcataatcacgagtgtgttagaaaattccagtgcaccatgtgtgataaggcatttaagagggcacaagatttgagggagcatacttcggtgcataccggcgaagtgctgtatacatgtccgaattgtcccatgacattcttttcaaacgctaatatgtataaacatcgGCAACGTTTGCATCGTGCTGAATGGGAGGCAGACCGTAGTAAACCTATACCTCCGAATATTATGAAACAAGCTAAACAGGGTAGCAAATTTGTTAAAACAAAACGTACTCTCTGCGAAACTACATCCTCTCATTTAATAACACCAATACCCATCATACCACCATCTACAGTCATAAATCCTCAGATATTAGGTTCGTTCGAATGGCCATCTAAAGGTAAACTACGTAAACACATGTATTGTCATGATACAAATAGACAGAAAATATGCGATCAATGTGGCAAAACCTTTGCCTGCAATTCAAGTATGCGAAAACATGTCGATGCCGAACATTCCGAATTGAAACCAGAACCCCAACAATGTAAGATTTGTAATACATGGTATCGCAACATGTCTGGCTTGCGGACACATATGAAATTTATGCATGAAAACGTTGGTGGCGAACACCGTTGTCAAATCTGCAATAAGCTATCGTCAAACGCCCGAgctctaagacggcacatttatttaaatcacgaatgtgaaaaaaaattcaagtgtcatatgtgtgagaaggcctttaagcgagaacaagatttgagagagcatatctctgtacataccggcgaagcattatacacttgtcccaactgccccatgacattttcctctagcgctaatatgtataaacatcgtcaaCGCTTACACAAGGCCGAATATGCCGCTCACAAACAGCAGCCATTGGCATTAAATATTATAAAGCAAGCAAAATCCATACCGAATACAGTGCGTACTAAAAGACGCATGATTGTTGAACCTCAAAAAGCTGAAATAGTTATGCCACCAACTACTGCTTTACTAAATCCACATATTGCTTTGACATCACAATACAGTGCGTTGATTCCCAATTTGACAAAATTGCACCATTAA
- Protein Sequence
- MVVKCLLCLEYPTIPGPKFLEIFGDDGLRLDISAIINKHFWLKTNRNCEAVQQICMTCWEVVRDFHILYQRVEEVHKHIGVKTIDLDDPLPQDVMLKSEDDPSTAQDPIMGDNGMGDSIFDPEVKVEVHDLDLLPQIEILETANVSERGARSNRRGRPPAREHSPKVSTKRIKKEQSPATDTNLDVFASSENLAKDGLNESGSLVNDNFSLLSNSLDKPDKDEGSSKKRGRPRKNDVEKAKPTMTRAKRLKKLQPAVETEIKDEKDNEAQPSCSSQNTTANKMESKIKTENPTQEHKLDDFTLATEQFEDDDAYAQDDYDDNDNNYTKDSDESSNSESESEASDGSEWGESQKKKEKYAVIMKKERNVPKKYKKREKPVVEPKRMSREEIEGRQAQQAEYDSIITKFFEKIRCPKCELLVHTFGEMRAHFRMDHNDDHGFVECCGRRFATRKFLAEHILVHYNPEHFKCKTCDKVCRDSTQLESHELTHLPNPPASKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKTLKSTYSLKKHHELEHSDVPKPVPIPQQCEICGAWLKHLSGLKQHMKNIHEGVQTEHRCHICNKVSSTARALKRHIYHNHECVRKFQCTMCDKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKFVKTKRTLCETTSSHLITPIPIIPPSTVINPQILGSFEWPSKGKLRKHMYCHDTNRQKICDQCGKTFACNSSMRKHVDAEHSELKPEPQQCKICNTWYRNMSGLRTHMKFMHENVGGEHRCQICNKLSSNARALRRHIYLNHECEKKFKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPLALNIIKQAKSIPNTVRTKRRMIVEPQKAEIVMPPTTALLNPHIALTSQYSALIPNLTKLHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200056;
- 90% Identity
- -
- 80% Identity
- -