Esuc012838.1
Basic Information
- Insect
- Epicampocera succincta
- Gene Symbol
- -
- Assembly
- GCA_932527255.1
- Location
- CAKOBP010000060.1:455459-470840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.1 2.6e+02 2.5 0.6 2 23 415 437 414 437 0.94 2 20 0.021 1.3 9.7 0.1 6 23 447 464 447 464 0.99 3 20 4.2e-05 0.0027 18.2 3.6 1 23 470 492 470 492 0.99 4 20 3.1e-05 0.002 18.6 2.9 1 23 505 528 505 528 0.92 5 20 3.1e-05 0.002 18.6 2.0 1 23 536 559 536 559 0.98 6 20 2.8e-05 0.0018 18.7 1.5 3 23 567 588 565 588 0.92 7 20 0.028 1.8 9.3 0.4 2 23 600 622 599 622 0.96 8 20 0.00097 0.063 13.9 6.2 1 23 629 652 629 652 0.93 9 20 3.2e-06 0.00021 21.7 0.7 1 23 658 680 658 680 0.98 10 20 0.00018 0.012 16.2 1.3 1 23 686 709 686 709 0.97 11 20 0.004 0.26 11.9 1.6 3 23 800 821 799 821 0.96 12 20 0.019 1.2 9.8 1.0 2 23 830 852 829 852 0.95 13 20 0.00017 0.011 16.2 1.4 1 23 859 882 859 882 0.93 14 20 4.7e-06 0.0003 21.2 1.7 1 23 888 910 888 910 0.98 15 20 1.7e-05 0.0011 19.4 0.9 1 23 916 939 916 939 0.97 16 20 8.9e-06 0.00058 20.3 1.2 3 23 1029 1050 1027 1050 0.93 17 20 0.01 0.66 10.7 0.8 2 23 1059 1081 1058 1081 0.96 18 20 6.9e-05 0.0045 17.5 2.2 1 23 1088 1111 1088 1111 0.93 19 20 2.7e-05 0.0017 18.8 0.5 1 23 1117 1139 1117 1139 0.98 20 20 1.7e-05 0.0011 19.4 0.9 1 23 1145 1168 1145 1168 0.97
Sequence Information
- Coding Sequence
- ATGGTGGTTAAATGCCTGCTTTGTTTAGAAAGTCCGACTATACCGGGTCCAAAATTTTTAGAAATATATGGAGAAGAAGGCACGCGTCTGGATATTAGTTCGATTATAAATAAGCACTTTTGGTTAAAGACAAACAGGAACAGTGAAGATGTACAACAAGTTTGCTTGACATGTTGGGAAGTTGTAAGAGATTTTCACATACTCTATCAGAGAGTAGAGGAAGCCCATAAACATTTAGAAGTTAAAACAATAGTATTGGATGACCCGTTACCTCAAGATGTTATGCTTAAGTCTGAAGATGATCAAGATCCTATAATGGGAGATAACGGCTTAGGAGATTCTATATTTGACCCGGAAGTTAAAGTTGAAGTACATGATTTAGATTTGCTGCCACAAATAGAAATATTAGAATCAGCGAATGTACCGGAAAGAGTCCATCGAACAGGCAGGCGAGGACGACAGCCAGCTAGGGAACAAAGTCCAAAAATATCTGCCAAGCGTATTAAGAAAGAACAATCTCCTGCCGCTGATGCAACGCAATTTAGTTTTGCTTCGGATGAAAATCTTAAAAACGATGACTTAAGTGCTTCAGGGTCTTTGGAAGACCACAGTAACACACAGAACTCAACTTCCCTTGATAAAGAGGAAAACAGCAGTAAAAGAAGAGGTCGACCTCGTAAATCGGATGTGGACAAAGCAAAACTAATTACAACTACAACCCGTTCTAAACGCTCAAAGAAACAGCAGCAACAACCACTGCAAACAGCAGAGGCAGACATCAAAAATGAAAAAGTGGTCGAAGAACAACCCTCATGTTCAAATGCACAATTGGCTACTGACGTTACGGCGGAACCAAAAATTAAAACGGAAAATCCCACGGAGGAACAAAATGCTACCGATTTTGTTAATGCGCCTGAAAGTTTTGAGGACGACGATGCTTATGCCCAAGATGATCTTGATGATGATAACGACAATGATAACAATTACACTAAAGAAACCGATGAATCCTCAGAGTCTGATTCAGAAGCAGAGGAATCCGAAGGCTCTGAGTGGAATGAATCTAAAAAAAAGAATGAAAAGTTTGCTGTCATTACAAAGAAAGAACGAAATGTTCCTAAAAAATATAAAAAAAGAGAGAAACCAACGGTAGAACCAAAACGCTTGAGCCGTGAAGAAATTGAAGCTCGTCAAGCCCAACAGGCTGAATATGACTCTATTATTACAAAATTCTTTGAGAAAATACGCTGTCCCAAGTGTGAACTTTTAGTTCACACATTTGGAGAAATGCGAGCGCACTTTCGTTCGGATCACAATGATGACCACGGTTTTATAGAATGCTGTGGTCGCAGATTCGCCACTCGCAAATTTTTGGCTGAACATATAATGGTTCATTACAATCCTGAACACTTCAAATGCAAAACGTGCGATAAAGTCTGTCGCGATTCTACACAATTGGAGAGTCACGAACAAACTCATTTGCCTAATCCACCACCATCGAAATATAAGAAAACGTTCCAGTGTGAAAAATGTTCTAAAACATTTTCCTCCAAAGCTTCATTTGAACATCACATGGTAGCAAAACATGTACCACGAGAAGAATTTAAATTTGAATGTCCTGAATGCAAGAAAAAATGTCCTACAGAAACAAAACTCAAGGATCACATGCGCAGTGTACACGATCCACAGAGAACCGTtatttgtgataaatgtggcaaagtatttaaaagtacctatagtcttaagaaacatcatgaactggaacattcggatgtacccaagccgataccgattccgcaacagtgcgaaatttgtggagcctggctcagacacttgtccggtctaaaacagcacatgaaaaatatacacgaatctgtgcagacagaacatcgttgccatatttgcaataaggtatcatccacttctagagcactcaaaaggcatatatatcataatcacgagtgtatacgaaaattccagtgcacaatgtgtgacaaagcatttaaaagagctcaagatttaagggaacacacttctgtgcatacgggtgaggtgttatatacctgtccaaactgccccatgacattcttttcgaatgcaaacatgtacaaacatcgtCAGCGCCTGCATCGTGCCGAATGGGAGGCAGATCGAAGTAAACCTATACCGCCTAACATAATGAAACAAGCAAAACAGGGTAGTAAATTTGTTAAAGTTAAACGGGCTGCTGGCGATACAGCTCCATCTCAATTGATTCAGCCAATGCCTATTGGACCGCCGACTGCAAATACTCTACATTCAGTTTTAAATCCTCAAATATTGTACGCCAACATGACATGGCCATCTAAAGCTAAACTACAAAAGCACATGTATTGTCACGACACAAGCAGACAGAAAATATGCGATCAATGTGGTAAAGCATTTTCCTGCAATTCCAGCATGCGCAAACACGTAGATACAGAACATTCCGATCTGAAGCCAGAACCACAGCAGTGCAAAATATGCAATACTTGGTATAGAAATGTGTCAGGCTTGCGAACGCACATGAAGTTCATGCATGAAAATGTCGGCGGTGAACACCGCTGCCAGATCTGCAACAAGGTGTCAACGAATGCTAGAGCCCTGAGACGACATATTTATTTAAATCATGAGTGTGAACGAAAATACAAATGTCATATGTGTGAAAAGGCTTTCAAACGCGAACAAGATTTAAGGGAACATATTTCTGTACATACTGGCGAGGCATTGTATACCTGCCCCAATTGCCCCATGACATTTTCTTCCAGTGCCAATATGTATAAGCATCGCCAACGTTTGCATAAAGCAGAATATGCAGCTCACAAGCAACAGCCGCTGGCATTGAACATAATTAAACAGGCAAAATCTGTACCGAATACAGTGCGAACAAAAAGACGTATGATGGCTGAATCAACGCCAACTGAAACGGTAGCTCCTTCTACAAATGATATGTTAGTGGCGCCGTCTGGGGTTTTAATAAATCCTCAGCTTGTTTTGGCAGCACAATTACCGTCTGAAACAAAATTGCGTGAACACATGCACAGTCACGATCCTACAAAACGTCAAATATGCGATAAGTGTGGCAAAACGTTTAAGAATAATTACAACATGAAAAAACATGAGGAGTCCGAACATTCCGAGGTTAAACCAGAACCTCAACAGTGTACCATTTGTAATACATGGTATCGTAATGTATCAGGTTTGAAGACCCACATGAAAAATATGCACGATGATATGGGCCATGAGCATCGTTGCAATATTTGTAATAAAGTTTCGACTACACAACGCGCCCTCAAAAGGCATATCTATTTGAATCACAAATGTGAAAAGAAATTCAAGTGTAATATGTGTGAAAAGGCTTTTAAAAGGGGTCAGGATTTAAGAGAACATATTTCGGTGCATACGGGTGAAGCTCTATATACTTGTCCTAATTGCCCCATGACCTTTTCATCCAGCGCAAATATGTACAAACATCGTCAGCGCTTACACAAGGCAGAATATGCGGCCTATAAACAACAAGCTATGCCGCCAAACATAATAAAACAAGCTAAATCGGGCTCAGCAAATAAACTGCGCACCAAAAGACGTTTTATGGAAACGTCGAACAGCTGTTCCAATGAAGACCTTATTTGTGGTTCAACCGATAACAATATTACTTCGGAAATTGAAAAAAATTCCTCGTTATTAAGTTCGCAATTTTTGACGGCCACACCGTTTGGCCTGCAATAG
- Protein Sequence
- MVVKCLLCLESPTIPGPKFLEIYGEEGTRLDISSIINKHFWLKTNRNSEDVQQVCLTCWEVVRDFHILYQRVEEAHKHLEVKTIVLDDPLPQDVMLKSEDDQDPIMGDNGLGDSIFDPEVKVEVHDLDLLPQIEILESANVPERVHRTGRRGRQPAREQSPKISAKRIKKEQSPAADATQFSFASDENLKNDDLSASGSLEDHSNTQNSTSLDKEENSSKRRGRPRKSDVDKAKLITTTTRSKRSKKQQQQPLQTAEADIKNEKVVEEQPSCSNAQLATDVTAEPKIKTENPTEEQNATDFVNAPESFEDDDAYAQDDLDDDNDNDNNYTKETDESSESDSEAEESEGSEWNESKKKNEKFAVITKKERNVPKKYKKREKPTVEPKRLSREEIEARQAQQAEYDSIITKFFEKIRCPKCELLVHTFGEMRAHFRSDHNDDHGFIECCGRRFATRKFLAEHIMVHYNPEHFKCKTCDKVCRDSTQLESHEQTHLPNPPPSKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKVFKSTYSLKKHHELEHSDVPKPIPIPQQCEICGAWLRHLSGLKQHMKNIHESVQTEHRCHICNKVSSTSRALKRHIYHNHECIRKFQCTMCDKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKFVKVKRAAGDTAPSQLIQPMPIGPPTANTLHSVLNPQILYANMTWPSKAKLQKHMYCHDTSRQKICDQCGKAFSCNSSMRKHVDTEHSDLKPEPQQCKICNTWYRNVSGLRTHMKFMHENVGGEHRCQICNKVSTNARALRRHIYLNHECERKYKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPLALNIIKQAKSVPNTVRTKRRMMAESTPTETVAPSTNDMLVAPSGVLINPQLVLAAQLPSETKLREHMHSHDPTKRQICDKCGKTFKNNYNMKKHEESEHSEVKPEPQQCTICNTWYRNVSGLKTHMKNMHDDMGHEHRCNICNKVSTTQRALKRHIYLNHKCEKKFKCNMCEKAFKRGQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAYKQQAMPPNIIKQAKSGSANKLRTKRRFMETSNSCSNEDLICGSTDNNITSEIEKNSSLLSSQFLTATPFGLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200056;
- 90% Identity
- -
- 80% Identity
- -