Ooch015300.1
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- -
- Assembly
- GCA_963402855.1
- Location
- OY727109.1:41367466-41375342[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.3 3.6e+02 2.0 0.5 2 23 408 430 407 430 0.91 2 15 0.028 1.6 9.4 0.1 6 23 440 457 440 457 0.99 3 15 2.3e-05 0.0013 19.1 2.9 1 23 463 485 463 485 0.99 4 15 2.6e-05 0.0015 18.9 2.9 1 23 498 521 498 521 0.92 5 15 2.6e-05 0.0015 18.9 2.0 1 23 529 552 529 552 0.98 6 15 3.7e-05 0.0021 18.5 2.1 3 23 560 581 558 581 0.91 7 15 0.023 1.3 9.6 0.4 2 23 593 615 592 615 0.96 8 15 0.0021 0.12 12.9 6.1 1 23 622 645 622 645 0.93 9 15 2.7e-06 0.00015 22.0 0.7 1 23 651 673 651 673 0.98 10 15 0.00015 0.0087 16.5 1.3 1 23 679 702 679 702 0.97 11 15 0.0069 0.4 11.3 1.6 3 23 788 809 787 809 0.89 12 15 0.011 0.63 10.7 1.5 2 23 818 840 817 840 0.95 13 15 0.00015 0.0084 16.6 1.4 1 23 847 870 847 870 0.93 14 15 4e-06 0.00023 21.5 1.7 1 23 876 898 876 898 0.98 15 15 1.5e-05 0.00084 19.7 0.9 1 23 904 927 904 927 0.97
Sequence Information
- Coding Sequence
- ATGGTGGTTAAATGCTTACTTTGCTTAGAAAATCCAACAATACCGGgtccaaaatttttagaaatatttggcGAGGAAGGATTGCGTTTAGATATAAGTgcgattataaataaacatttttggttaaaaACAAACAAGAATTGTGAAGATGTACAACAAATATGTGTGACATGTTGGGAGGTGTTAAGAGATTTCCACATACTCTATCAGAGAGTGGAGGAAGTACACAAGCATATAAGTGTCAAGACAATAGTATTGGATGATCCGCTACCTCAAGATGTTATGCTTAAGTCCGAAGATGATCCTTCCATGGCACAAGATCCTATAATGGGTGATAATGGTGTTAGTGATTCTATATTTGATCCGGAAGTGAAAGTTGAGGTACATGACTTGGATTTGTTGCCACAAATTGAAATACTAGAGACTGCGAATGTGCCAGAAAGAGGTACGAGATCAAATCGACGTGGAAGACCGTTGGCAAGAGAACAAAGTCCAAAAATATCGACAAAACGCATAAAGAAAGAACAATCCCCTGCGGCAGATATAACTTTAGATATATATGGCTCAAATCAGAATCCAAAAAAGGATGACTTAAATAGCGCTGGCTCATTGGAAGATATCAGCAAGGCATTGCCAAATTCTGTTGATAAAGATGAAGGGAACAGTAAAAGAAGAGGTAGGCCTAAAAAAACGGATCCGGAAAAAGCAAGGTCAATTCGTTTGAAACGTTCAAAAAAACATCTTCAAACATCGGAAGCGGAAATAAAGAACGAACAAGATGTGGAAGATCAGCCATCGTGTTCAACTGCACAACAGACAACAGTTGCCCCACAagagacaaaaattaaaacagaaaatccCACAGAAGAACAAAACTCAAATGACTTGGTTGTGGCTCCAGATATTCTAGAAGATGATGATGCATACATACAAGATGATTTTGATGAAGATAATGACAATAACTACAGGAAAGACTCTGATGTGTCTTCAAGTTCTGAATCGGAAATTGATGACTCAGATGGCTCTGATTGGAatgatgataaaaaaaagagagaaaagtTCGCtgttattatgaaaaaagaacGAAATGTCcctaaaaaatacaagaagaGAGAAAAATCTTCTGTGGAACCAAAACGTATGAGCCGTGAAGAAATTGAGGCACGCCAAGCTCAGCAGGCTGAATATGATTccattattacaaaattttttgaaaaaatacgaTGTCCGAAATGTGAACTTTTAGTTCATACATTTGGTGAAATGCGGGCGCATTTTCGTTTGGATCATAATGATGATCATGGCTTTGTGGAGTGTTGTGGTCGCCGCTTTGCCACACGAAAATTTTTAGCCGAACACATATTAGTTCATTATAATCCTGAACACTTCAAATGCAAAACATGTGATAAAGTTTGTCGCGATTCTACGCAATTGGAGGTACACGAACAAACGCATTTGCCCAATCCGCCTCCATCGAAATACAAGAAAACGTTCCAGTGTGAAAAATGTTCTAAGACATTTTCATCTAAAGCGTCATTCGAACATCACATGGTAGCAAAGCATGTACCCAGAGAAGAATTCAAATTTGAGTGCCCTGAATGTAAGAAAAAATGCCCCACAGAAACAAAACTCAAAGACCATATGCGCAGTGTACATGATCCGCAGAGGACCGTAATATGTGATAAGTGtgggaaaacttttaaaagtaccTACAGTCTAAAAAAACATCATGATCTTGAGCATTCGGATATACCAAAACCAGCACCAATTCCTCAACAATGTGAAATTTGTGGCGCCTGGTTGAGACATTTGTCCGGCCTAAAACAACATATGAAAAACATACATGAGTCTGTACAGACGGAGCATCGTTGTCATATTTGTAGTAAAGTATCGTCCACATCTAGAGCACTTAAAAGACATATTTATCATAATCATGAATGTGTTCGAAAATTCCAATGTACAATGTGTgataaagcatttaaaagaGCACAAGATTTACGGGAACATACTTCCGTTCACACAGGTGAAGTATTATATACATGCCCAAATTGTCCCATGACTTTCTTCTCGAATGCTAATATGTATAAACATCGCCAGCGTTTACATCGTGCTGAGTGGGAGGCGGATCGGAGTAAACCGATACCACCAAATATTATGAAACAAGCTAAACAAGGtagtaaatttgttaaaacaaaacgTACTCCTGGTGAATCTACGGCAGCTCAATTAATAACGCCAATGCCTATTCTGCCACCCTCATCAGCAGCTCTTCATTCTGTTTTAAATCCTCAAATATTATGGCCATCTAAAGCTAAACTACAAAAGCACATGTATTGTCATGATACAAACAGGCAAAAAATATGCGACCAGTGTGGTAAGACATTTTCCTGCAATTCTAGCATGCGTAAACATGTTGACGCTGAACATTCCGAGTTAAAACCAGAGCCACAACagtgtaaaatatgtaatacatGGTATCGGAATACGTCTGGATTGAGAACACACATGAAGTTTATGCATGAAAATATTGGAGGAGAACATCGTTGCCAAATCTGCAATAAAGTGTCAACTAATGCTAGAGCTTTAAGAagacacatttatttaaatcacgAATGTGAACGAAAGTACAAGTGTCACATGTGTGAGAAAGCTTTCAAGCGAGAGCAAGATTTGAGGgaACATATCTCTGTTCACACTGGCGAGGCATTGTATACCTGCCCCAATTGTCCCATGACATTTTCCTCTAGTGCCAACATGTATAAACATCGGCAGCGCTTGCATAAGGCCGAATATGCAGCGCATAAACAACAGCCTTTAgcgttaaatataataaaacaagcaaAGTCTATGCCGAATACAGTGCGAACCAAAAGACGCATGAATGCGGAACGTCCCGTAGCTGAAATTGTTGTACGTCCTAATTCAGTTTTGTTAGACCCCCAGTACATTTTAACATCACCTTATGGTcgtaatttatcaaaatttggcgattaa
- Protein Sequence
- MVVKCLLCLENPTIPGPKFLEIFGEEGLRLDISAIINKHFWLKTNKNCEDVQQICVTCWEVLRDFHILYQRVEEVHKHISVKTIVLDDPLPQDVMLKSEDDPSMAQDPIMGDNGVSDSIFDPEVKVEVHDLDLLPQIEILETANVPERGTRSNRRGRPLAREQSPKISTKRIKKEQSPAADITLDIYGSNQNPKKDDLNSAGSLEDISKALPNSVDKDEGNSKRRGRPKKTDPEKARSIRLKRSKKHLQTSEAEIKNEQDVEDQPSCSTAQQTTVAPQETKIKTENPTEEQNSNDLVVAPDILEDDDAYIQDDFDEDNDNNYRKDSDVSSSSESEIDDSDGSDWNDDKKKREKFAVIMKKERNVPKKYKKREKSSVEPKRMSREEIEARQAQQAEYDSIITKFFEKIRCPKCELLVHTFGEMRAHFRLDHNDDHGFVECCGRRFATRKFLAEHILVHYNPEHFKCKTCDKVCRDSTQLEVHEQTHLPNPPPSKYKKTFQCEKCSKTFSSKASFEHHMVAKHVPREEFKFECPECKKKCPTETKLKDHMRSVHDPQRTVICDKCGKTFKSTYSLKKHHDLEHSDIPKPAPIPQQCEICGAWLRHLSGLKQHMKNIHESVQTEHRCHICSKVSSTSRALKRHIYHNHECVRKFQCTMCDKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRSKPIPPNIMKQAKQGSKFVKTKRTPGESTAAQLITPMPILPPSSAALHSVLNPQILWPSKAKLQKHMYCHDTNRQKICDQCGKTFSCNSSMRKHVDAEHSELKPEPQQCKICNTWYRNTSGLRTHMKFMHENIGGEHRCQICNKVSTNARALRRHIYLNHECERKYKCHMCEKAFKREQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRLHKAEYAAHKQQPLALNIIKQAKSMPNTVRTKRRMNAERPVAEIVVRPNSVLLDPQYILTSPYGRNLSKFGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200056;
- 90% Identity
- -
- 80% Identity
- -