Agra036224.1
Basic Information
- Insect
- Anoplolepis gracilipes
- Gene Symbol
- -
- Assembly
- GCA_031304115.1
- Location
- JAPWJP010002701.1:6048102-6052893[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.71 1.3e+02 4.6 8.0 2 23 275 297 274 297 0.97 2 18 0.041 7.4 8.5 2.2 1 23 350 372 350 372 0.97 3 18 0.029 5.3 9.0 1.5 1 23 421 443 421 443 0.98 4 18 0.041 7.5 8.5 0.2 1 20 497 516 497 518 0.92 5 18 0.029 5.2 9.0 1.9 1 23 558 580 558 580 0.97 6 18 0.0002 0.035 15.8 0.6 1 23 617 639 617 639 0.97 7 18 0.00037 0.068 14.9 0.1 1 23 645 667 645 667 0.97 8 18 0.00077 0.14 13.9 2.6 1 23 712 735 712 735 0.96 9 18 0.37 68 5.5 2.8 1 23 741 764 741 764 0.88 10 18 2.3e-05 0.0042 18.7 1.1 2 23 771 793 770 793 0.97 11 18 0.00028 0.05 15.3 0.0 1 23 801 823 801 823 0.92 12 18 0.068 12 7.8 0.3 1 20 884 903 884 903 0.97 13 18 0.00032 0.059 15.1 0.1 2 23 923 944 922 944 0.97 14 18 2.2e-05 0.004 18.8 1.2 1 23 957 979 957 979 0.97 15 18 0.0004 0.072 14.8 2.9 1 23 1001 1024 1001 1024 0.92 16 18 0.0025 0.45 12.3 1.7 2 23 1084 1106 1083 1106 0.96 17 18 0.0025 0.46 12.3 0.8 1 23 1128 1151 1128 1151 0.91 18 18 0.0081 1.5 10.7 0.4 2 23 1240 1262 1240 1262 0.96
Sequence Information
- Coding Sequence
- ATGGAGGACGAGGACGTGGTGGAGATCGGGAACGTGGAGAATGTCTGCCGGCTGTGCCTGTCCGTAGACGAGCCGAAGTCCTCCGTGTTCGCCCAGAAACgtgaggaggaggaggagaagaacCCGTCTAACGTGCCGTTGGCCGCCAAGATCCAGGCTTGCTTGTCGATCCAGATTTCAACTACTGATAAGCTGTCTACACTGATATGTGCAAATTGTGTAAAGAATGTTAACCAGTGGCATGCTTACAAGGAGTCGTGTCTACGTTCGCAAGACAAACTACAAGAATGGCTGACAAATCAGTCACACCCAAACCCTACAGTTATAACAATCAAGGATGAACCAATGGATATTGATTACGAGgacaatatagaaattatatcaaagaCTACTAATAATTTGGAACAAACAGATCCATCGACTCAAACAGTGGAAAACGAGGAGACTGATGATAAAGAAGTGCAAGAAGTAGTAGATGAAAGCGATGCGAATGACGCACATAAAGAAAATGACTCTGAAACAGTTCCATCTGTCACGCAGATGCAACCTGATAAAGAACAAGGTCAAACGGATCAACAGGATTCTACAGTTGTACGCGTTAAAACTGAGCCACAGGACGACGATGATACCGATTGCACTGTTGAAGTAGAATCCGCGAACGGCAGTGAACTATTATTGAATCCCATGGCAGTTGGCGCGAAGGAAGATACGGTTATGGAAGCCGATTCTACGCAAAAATCTAACGCAGCTAGCGCGCCACCTAAGAAGAAATTGCGGCGCGGTCCTCATACGCATTTCAGAGGAACGCGCGTCTTTAAAAAGAAGTGCACACATTGTCAGATATTTCTGCATTCCAAATACACGTACATGAAGCACATGAAGAGATTCCACAGCAAGGAGAACGGCGGCATCGACAACTTGGAGTCGATATCGCAGAATGACGATGACGAAGAGATGATAGAAGATTTAGAAGATGAGTTGGTCAGTATGGAGAAAGATTCGCCGCTTACGCAGGTTCAACAAAACATTATTAGCCAATTGAAAACATTCTCCTGCTATTCCTGTGAACAGACGTTCAATGATCGGCGTAGCACGTTGTCACACATACGCCAACATCTACCAGATTTAAGACCATACACGTGCATCGCTTGCTTGACCGAATTCCCCGATCGGTCCATGTATCAATTACATTGCGGTGCATCTTTTGAATGCGCCATGAAGATTGCTCTAGTAATACCCAAGCACGGTAACGAGCGGTATTTTACATGCAACATGTGCCTACGCTCGATGCGCGACAGGAAGGAGTTGTTAAGTCACTTGTCGAAACATTCTGACAAGCAGTACGAGGAGATGATAGCGCCTGCGCGCGCGCCACCCAAGCTGAAACCGATGGCGCCGTTGCCATCTGCGAAAAGCAATTCCGATAAAGCGCAGAAGAACGTGGCGCGGTCCAACGGACCTTACAAGAACGGCGATCCAGCGTACAATCATGCCTGTGATCTGTGCGGCATGATTTACAGATACCGACCCAATATGTTTAAGCATCGCGAAGTCTGTATGCAGCAGCAGCCGGAGAATAGAACGTCGTACAAGTGCGTACACTGTTTTATGACATTCCTCGTGTTCAAGAAGTTTCATACTCACATTACGGTTGATCATAAGAAGAAGGAATTTACTTGTGCCGTGTGCAATTCGAAATACCGATCACCTAGCGATTACTTGACTCATCACGAGAACCATCGCGCGGCGACGTATGGCGGCAATAGTCAGACACAGGAGGATACATCGCAGAACGCGGTACAGGAACGAAACGCCAAATCGCCCAAGTCAAGAATCGGTGGTCACAAATATAGTTGCGCGCTCTGCACTCAGGAATTTTCCACGAGGTCTGAGTTAATGGAACATCGGAATCTCCATCTCAAAGTGAAGATATACTCGTGTGCCATTTGTCGCAGCATGTTCAGTAGTCCGGGCGCGTTGGAGATACATATGAAGGATCACGGCATCGAGGATCCGAATGAACGAAACGCCAATATTTCCTGCGTAGAGTACGGTAGCTTGGATGAGGATATGAGGATCAACGAGAAGGACTCGATGAACGCCAGTGCCACCTCGGATCCCGGTACGCAGATTCACGAGTGCTGCGAGTGCGGTAAAGTGATGTCAAATTTTGCCAATCTACGCCGACACACCAAGATCGCGCATCGGAATGTCAAGATTTACGATTGTATCGAATGCTCGCGGATGTTTACGCGTAAGGAGCTGTACGACCATCACAAGCAGCTCAAACACAATTCGAAGACCATGTTGCAGTGTCCCCAGTGTCCCAAGAGTTTCGTCTTCCAAACAAACTTTACCTACCATTTTCGCACCGCCCATCttgaaaaatcgcaaaatggttaTGCATGCGACATTTGTGGCAAGGTTTTCGTCGAAGAGGCGTCCTTGAAAATACACAAGGGTTGGCATAATCGCGCCAACTCTCGTTTAAGCACACGATTCATACTGGGCAATCAAAAGACGCCCGAGGACGAGTTACAGACAGAGTCAGCTGGCGTTGATTCGGCCGAGAATTCGGAACGGCCGGCGAGAGCACGAAAGTCATTCCCCAATCTGCCGCTCCAACCGACAACGTCGTCGGAAGGAAATTTCCAGTGTCAAGTATGCAATGACAAATTCAATGACGTCAGGGAGCTGAGGAACCATTTATGGGACGTTCATTGCGCTCGCAATAAGCCGGAAAAGAAATTCTCTAACGACGAGCTCCAGTGCGAACTCTGCACGAACGTCTTCCCCGATCGGGAGACCTTGGCGTCACACATGCGGTGGCACAAGGCCAACCCGATTCTCAGCGACATGAAAAAGACGTACTCTTGCGACGTGTGTGGCAAGTCTTATAGCTCGAAGAAAGTTCTATGGAAACATAAAAAGCTACACAAGGCCACCGTCGTGGCATCGATCAAGTTCCAATCTTTGGCCAGGAAACCGATGGCCAGCCAATTTCTTTGTAACTTTTGTCGGAAGGTCTTTTCCAGCAGCCAGTCGTTGCAACGGCACAAGCTCAACTTCCACAGCGAGCTACAACACCCACAACGGACGCAACAACAATTGTACAATAACAATCGTAGATTGTCGTACGAGGATGAGCCAAGAGCGAAGCGTATGAAGCTCGAGGTCGACGACGACAATTCGCCGCATAAGCTATCGCCTTTTGCGATGGATTTTGCCGGCGAGAGGAGAAAGCCAGTTATGTGCCATTTGTGCAAGAAGATGTTCCCGAATATGAGCGTGCTATACAAACACAAGCAGACCGCGCACAAGCATCGAGCGAGAAAGGACCCCATACCTGAGTGCATACCAATGTCGACTCAGGACGGCAAGTTCTTGTGCAACATCTGCTTCAAGGAGTTCCCAGGCCTATCGAATCTACGACAGCATTTCACGATTAAGCACAAGAAAGGCGCGCAATCGCTCAGCCATCGGCCGTCGATCGGCGACGCGGTCTCCGAACGACCGACAAAGGAACCCGAGTCGCCGACCACCCACAATAACGTCATGTTCAGCTGCAAGCTTTGCAAGCAGTGCCACGTCTTCAACAAGCAAGCGATTATTAATCACATCACCAATGTACACAATGCGGTGTATCAGGCTGACAGCAGGACGTTTCACAGGGAAGTCAATCTGAGCGGTTACGCGGTAAAAGGTGCGATCGGGGCTACGTGCCCGCGATGCAACGTTAAGTATCCCAACAACCGAGCTCTAAAGATACATTACATCAAGTTCCACGAGAACACCGATTGA
- Protein Sequence
- MEDEDVVEIGNVENVCRLCLSVDEPKSSVFAQKREEEEEKNPSNVPLAAKIQACLSIQISTTDKLSTLICANCVKNVNQWHAYKESCLRSQDKLQEWLTNQSHPNPTVITIKDEPMDIDYEDNIEIISKTTNNLEQTDPSTQTVENEETDDKEVQEVVDESDANDAHKENDSETVPSVTQMQPDKEQGQTDQQDSTVVRVKTEPQDDDDTDCTVEVESANGSELLLNPMAVGAKEDTVMEADSTQKSNAASAPPKKKLRRGPHTHFRGTRVFKKKCTHCQIFLHSKYTYMKHMKRFHSKENGGIDNLESISQNDDDEEMIEDLEDELVSMEKDSPLTQVQQNIISQLKTFSCYSCEQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVIPKHGNERYFTCNMCLRSMRDRKELLSHLSKHSDKQYEEMIAPARAPPKLKPMAPLPSAKSNSDKAQKNVARSNGPYKNGDPAYNHACDLCGMIYRYRPNMFKHREVCMQQQPENRTSYKCVHCFMTFLVFKKFHTHITVDHKKKEFTCAVCNSKYRSPSDYLTHHENHRAATYGGNSQTQEDTSQNAVQERNAKSPKSRIGGHKYSCALCTQEFSTRSELMEHRNLHLKVKIYSCAICRSMFSSPGALEIHMKDHGIEDPNERNANISCVEYGSLDEDMRINEKDSMNASATSDPGTQIHECCECGKVMSNFANLRRHTKIAHRNVKIYDCIECSRMFTRKELYDHHKQLKHNSKTMLQCPQCPKSFVFQTNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRFILGNQKTPEDELQTESAGVDSAENSERPARARKSFPNLPLQPTTSSEGNFQCQVCNDKFNDVRELRNHLWDVHCARNKPEKKFSNDELQCELCTNVFPDRETLASHMRWHKANPILSDMKKTYSCDVCGKSYSSKKVLWKHKKLHKATVVASIKFQSLARKPMASQFLCNFCRKVFSSSQSLQRHKLNFHSELQHPQRTQQQLYNNNRRLSYEDEPRAKRMKLEVDDDNSPHKLSPFAMDFAGERRKPVMCHLCKKMFPNMSVLYKHKQTAHKHRARKDPIPECIPMSTQDGKFLCNICFKEFPGLSNLRQHFTIKHKKGAQSLSHRPSIGDAVSERPTKEPESPTTHNNVMFSCKLCKQCHVFNKQAIINHITNVHNAVYQADSRTFHREVNLSGYAVKGAIGATCPRCNVKYPNNRALKIHYIKFHENTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00280134; iTF_00280709; iTF_00265198; iTF_00729544; iTF_00730255; iTF_00730965; iTF_01245407; iTF_00264484; iTF_01254995; iTF_00869085; iTF_00867649; iTF_00868294;
- 90% Identity
- -
- 80% Identity
- -