Basic Information

Insect: Polyergus mexicanus
Gene Symbol: -
Assembly: GCA_030449975.1
Location: JAUDSZ010000002.1:5871391-5876188[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.12 20 7.2 5.7 2 23 280 302 279 302 0.97

2 18 0.044 7.7 8.5 2.2 1 23 355 377 355 377 0.97

3 18 0.031 5.5 9.0 1.5 1 23 426 448 426 448 0.98

4 18 0.066 12 7.9 0.3 1 20 500 519 500 520 0.93

5 18 0.24 41 6.2 2.1 1 23 561 583 561 583 0.94

6 18 0.00013 0.023 16.4 0.7 1 23 626 648 626 648 0.97

7 18 0.0005 0.087 14.6 0.1 1 23 654 676 654 676 0.97

8 18 4.6e-05 0.008 17.9 2.3 1 23 721 744 721 744 0.96

9 18 0.00055 0.097 14.5 2.0 1 23 750 773 750 773 0.96

10 18 6.1e-06 0.0011 20.6 1.0 2 23 780 802 779 802 0.97

11 18 0.0003 0.052 15.3 0.0 1 23 810 832 810 832 0.92

12 18 0.069 12 7.9 0.3 1 20 894 913 894 913 0.97

13 18 0.00035 0.061 15.1 0.1 2 23 933 954 932 954 0.97

14 18 0.068 12 7.9 4.0 1 23 967 989 967 989 0.97

15 18 0.0047 0.83 11.5 2.3 1 23 1011 1034 1011 1034 0.92

16 18 0.0029 0.51 12.2 1.8 2 23 1094 1116 1093 1116 0.96

17 18 0.00071 0.12 14.1 1.0 1 23 1138 1161 1138 1161 0.93

18 18 0.0087 1.5 10.7 0.4 2 23 1248 1270 1248 1270 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.12	20	7.2	5.7	2	23	280	302	279	302	0.97
2	18	0.044	7.7	8.5	2.2	1	23	355	377	355	377	0.97
3	18	0.031	5.5	9.0	1.5	1	23	426	448	426	448	0.98
4	18	0.066	12	7.9	0.3	1	20	500	519	500	520	0.93
5	18	0.24	41	6.2	2.1	1	23	561	583	561	583	0.94
6	18	0.00013	0.023	16.4	0.7	1	23	626	648	626	648	0.97
7	18	0.0005	0.087	14.6	0.1	1	23	654	676	654	676	0.97
8	18	4.6e-05	0.008	17.9	2.3	1	23	721	744	721	744	0.96
9	18	0.00055	0.097	14.5	2.0	1	23	750	773	750	773	0.96
10	18	6.1e-06	0.0011	20.6	1.0	2	23	780	802	779	802	0.97
11	18	0.0003	0.052	15.3	0.0	1	23	810	832	810	832	0.92
12	18	0.069	12	7.9	0.3	1	20	894	913	894	913	0.97
13	18	0.00035	0.061	15.1	0.1	2	23	933	954	932	954	0.97
14	18	0.068	12	7.9	4.0	1	23	967	989	967	989	0.97
15	18	0.0047	0.83	11.5	2.3	1	23	1011	1034	1011	1034	0.92
16	18	0.0029	0.51	12.2	1.8	2	23	1094	1116	1093	1116	0.96
17	18	0.00071	0.12	14.1	1.0	1	23	1138	1161	1138	1161	0.93
18	18	0.0087	1.5	10.7	0.4	2	23	1248	1270	1248	1270	0.96

Sequence Information

Coding Sequence: ATggtggacgtggacgtggtGGAGATCGGGAACGTGGAGAATGTCTGCCGGCTGTGCCTGTCCGCGGACGAGCCGAGGTTCTCGGTGTTCGCGCAGGACCGAGAGGAAGATCCGTCCGGCGTGCCGTTGACCGCCAAGATCCAGGCTTGCCTGTCGATCCAGATTTCAGCCACTGATAGGTTGTCCACGCTAATATGCGCAAATTGTGTGAAGAATGTTAATCAGTGGCATACCTACAAGGAGTCATGTCAGCGTTCGCAGGACAAGCTGCAAAAATGGCTGGCAACTCAGTCGCAACCAAATCCTACGGTTATAACAATCAAGGATGAGCCAGTGGATATTGACTACGAGGACAATATAGAGATTATCTCAGAGACTACCAATAACTTGGAACAAGCACATCTACCGGCTCAAACATTGGAAAATGAGGAGACTGATAATAAGGAAGTGCAAGAAGTACTAGATGAAACTGATGCAAAAGCTGATATGAAAACTGATGCGAATGACACACATAAAGAGGATAACTCGGAAACAATTCCATCTGTCACTGAGATGCAGCCTGACAAAGACCAAAATCAAATGGATCAGCAGGATTCTTCAGCTCTACGTTCCATTAAAATCGAGCCACAGGATGACGATGATACCGATTGCACTATCGAAGTAGAATCCACGAACGGCAATGAACTATTATTGAATCCCATGGCAGTTGCCACAAAGGAAGATACGGTTATGGAGGCCGATTCTACGCAAAAATCTAATGCAGCTGGCGCGCCGCCCAAAAAGAAATTGAGACGCGGTCCTCATACCCATTTCAGAGGAACGCGtgtctttaaaaagaaatgcACGTATTGTCAGATTTTTCTGCATTCCAAATACTCTTATATGAAGCACATGAAAAGATTCCACAGTAAGGAGAACAACGGTATCGACAATTTGGAGTCGATATCGCagaacgacgacgacgaagagATGGTGGAGGATTTGGAAGACGAATTAGTCAGTATGGAGAAGGACTCGCCGCTGACGCAGGTCCAACAAGAGATTATTAGCCAATTGAAAACATTCTCCTGCTATTCTTGCGAACAGACGTTTAACGATCGGCGTAGCACGCTCTCCCACATACGCCAACATCTGCCGGATTTAAGACCATACACGTGCATTGCTTGCTTAACTGAATTCCCCGATCGATCCATGTACCAATTACATTGCGGCGCATCCTTTGAGTGCGCCATGAAGATTGCCCTTGTAGTGCCCAAGCACGGTAACGAGCGATATTTTACATGTAACATGTGCTTACGTTCGATGCGCGACAGGAAGGAACTGCTGAGCCACTTGTCGAAACATTCTGACAAGCAATACGAGGAGATGATGTCGCCGGCACGCGCGCCACCTAAATTGAAACCGATGGCGCCGTTACCATCTACAAAAAGCAGCTCCGATAAAGCACAAAAGACTGTCATCAATGGACCTTATAAGAACGGCGATCCGGCGCACAATCATGCTTGTGATCTATGTGGCATGATTTACAGATACCGACCCAATATGTTTAAGCATCGCGAATTCTGCATGCGGCTACAGCCAGAGAATAGAACATCGTACAAGTGCGTGCACTGTTCCATGACGTTTCTCGTGTTTAAAAAGTTTCATACTCACATCACGGTTGATCACAAGAAGAAAGAGTTTACTTGCATTGTGTGCAACTCGAAATTCCGATCGCCCAGCGATTACTTGACTCATCACGAGAATCATCGCGCGGCGACACGCGGCAATCGTCAGACGCAGGAGGACATGTCGCAGAATGGAGTTCAGATACCATTGAAGGAACGGAACCGAGGGGACGCCAAGCTGGTCAAGTCAAGAATCGGCGGTCAGAAATACAGTTGTGCGCTCTGCACCCAGGAATTCTCCACGAGGTCTGAGCTAACGGAGCACCGAAATCTCCATCTCAAAGTGAAGATATATTCGTGCGTCATTTGTCGCAGCATGTTTAGTAGTCCGGGTGCGTTAGAGATCCACATGAAAGATCACGGCATCGAAGACCCGAATGAACGAAACGCCAATATCTCTTGCGTGGAGTACGGTAATTTAGATGAAGACATAAGGATTAACGAGAAAGACTCGATGAACGCGAGTGCCATCTCGGATCCCGGTACGCAGATTCACGAGTGCTGCGAGTGCGGTAAGGTGCTGTCAAATTACGCCAATCTTCGCCGGCATACCAAGATTGCGCATCGGAACGCCAAGATCTATGATTGTGCCGAATGCTCACGGATGTTTACGCGTAAGGAGCTGTATGACCACCATATGCAAATCAAACACAACTCGAAGACGATGTTGCAGTGTCCTCAATGTCCCAAAAGTTTTGTCTTCCAGTCGAACTTCACTTATCATTTTCGTACCGCTCATCTTGAGAAATCGCAAAACGGTTACGCATGCGACATCTGCGGCAAAGTTTTTGTCGAGGAAGCGTCCCTGAAAATACACAAGGGCTGGCATAATCGGGCCAACTCTCGTCTGAGCACACGATTCATACTGGGTAATCAGAAGATGCCCGATGATGAGTCACAAATGGAGTCGGCCGGTGTCGAATCGGGTGAGAATTCGGAACGGCCAGCAAGAGCACGAAAGTCATTCCCCAATCCTCCGCTTCAATCACCGACGACTTCATCGGAGGGGAATTTCCAGTGTCAAGTATGCAATGATAAGTTCAACGACGTCACGGAATTAAGAAATCATCTATGGGACGTCCATTGCGCCCGCAACAAGCCTGAGAAAAGTTTCTCCAACGATGAACTCCAGTGCGAACTGTGCACAAACGTCTTCCCCGATCGGGAGACCTTGGCGTCACACATGCGGTGGCATAAGGCCAACCCGATTCTCAGCGACATACGAAAGACGTACTCTTGCGATGTGTGCTGCAAGTCTTACAGCTCAAAGAAGGTCTTGTGGAAGCATAAGAAGTTACACAAGGCCACTGTCGTGGCGTCGATCAAATTTCAATCCTTGGCCAGGAAACCGATGGCCAGTCAATTTCTTTGCAACTTTTGCCGGAAAGTGTTCTCCAGTGGCCAGTCGCTACAACGGCATAAGCTTAACTTTCATAGCGAGCTGCAGAATCCGCAACGGACGCAGCAACAATTGTATAATAGCAATCGTAGATTGTCGTACGAGGACGAACCGAGAACGAAGCGTATGAAGCTCGAGATCGATGACGACAATCCGCCGCCTAAGCTGCCGCCATTTGCCATGGATTTCGCCGGCGAGAGGAGGAAGCCAGTCATGTGTCACTTGTGCAAGAAAATGTTCCCGAATATGAGCGTGCTATACAAGCACAAGCAGACCGTGCATAAGCATCGAGGAAGGAAAGACTTGATACCAGAGTGCATACCGATGCCGACTCAAGGCGGCAAGTTTTCATGCAACATCTGCTTCAAGGAGTTCCCAGGCCTGTCGAATCTGCGACAGCACTTCACAATTAAGCACAAGAAGGGCTCGGAAACCGGCCATCCGCGATCGAGCGGCGACGCGCTCTCCGAACGACCGACGAAGGAAGCCGAGTCACCGACTCACAACAATGTCATGTTCAGCTGCAAACTGTGCAAGCAGTGCCATGTCTTCAACAGGGAAGCGCTCATGCATCACATCACCACTGTGCACAACACGGTATACCAGGCTGACAGCAGGACGTTTCACAGGGAGGTCAATTTGGGCGCTTACGTAGTAAAGGGCGCGATCGGCGCTACGTGCCCACGATGCAATGTCAAGTATCCCAACAACCGGGCTCTAAAGATACACTATATTAAATTCCACGATAACACCGATTAA
Protein Sequence: MVDVDVVEIGNVENVCRLCLSADEPRFSVFAQDREEDPSGVPLTAKIQACLSIQISATDRLSTLICANCVKNVNQWHTYKESCQRSQDKLQKWLATQSQPNPTVITIKDEPVDIDYEDNIEIISETTNNLEQAHLPAQTLENEETDNKEVQEVLDETDAKADMKTDANDTHKEDNSETIPSVTEMQPDKDQNQMDQQDSSALRSIKIEPQDDDDTDCTIEVESTNGNELLLNPMAVATKEDTVMEADSTQKSNAAGAPPKKKLRRGPHTHFRGTRVFKKKCTYCQIFLHSKYSYMKHMKRFHSKENNGIDNLESISQNDDDEEMVEDLEDELVSMEKDSPLTQVQQEIISQLKTFSCYSCEQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGNERYFTCNMCLRSMRDRKELLSHLSKHSDKQYEEMMSPARAPPKLKPMAPLPSTKSSSDKAQKTVINGPYKNGDPAHNHACDLCGMIYRYRPNMFKHREFCMRLQPENRTSYKCVHCSMTFLVFKKFHTHITVDHKKKEFTCIVCNSKFRSPSDYLTHHENHRAATRGNRQTQEDMSQNGVQIPLKERNRGDAKLVKSRIGGQKYSCALCTQEFSTRSELTEHRNLHLKVKIYSCVICRSMFSSPGALEIHMKDHGIEDPNERNANISCVEYGNLDEDIRINEKDSMNASAISDPGTQIHECCECGKVLSNYANLRRHTKIAHRNAKIYDCAECSRMFTRKELYDHHMQIKHNSKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRFILGNQKMPDDESQMESAGVESGENSERPARARKSFPNPPLQSPTTSSEGNFQCQVCNDKFNDVTELRNHLWDVHCARNKPEKSFSNDELQCELCTNVFPDRETLASHMRWHKANPILSDIRKTYSCDVCCKSYSSKKVLWKHKKLHKATVVASIKFQSLARKPMASQFLCNFCRKVFSSGQSLQRHKLNFHSELQNPQRTQQQLYNSNRRLSYEDEPRTKRMKLEIDDDNPPPKLPPFAMDFAGERRKPVMCHLCKKMFPNMSVLYKHKQTVHKHRGRKDLIPECIPMPTQGGKFSCNICFKEFPGLSNLRQHFTIKHKKGSETGHPRSSGDALSERPTKEAESPTHNNVMFSCKLCKQCHVFNREALMHHITTVHNTVYQADSRTFHREVNLGAYVVKGAIGATCPRCNVKYPNNRALKIHYIKFHDNTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110015;
90% Identity: iTF_00729544; iTF_00730255; iTF_00730965; iTF_00280709; iTF_00280134;
80% Identity: -