Pimp002259.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Prenolepis imparis
Gene Symbol
-
Assembly
GCA_030444845.1
Location
JAUDTA010000001.1:22071082-22075889[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.49 96 5.2 7.9 2 23 297 319 296 319 0.97
2 18 0.044 8.6 8.5 2.2 1 23 372 394 372 394 0.97
3 18 0.031 6.1 8.9 1.5 1 23 443 465 443 465 0.98
4 18 0.066 13 7.9 0.3 1 20 519 538 519 539 0.93
5 18 0.0013 0.26 13.2 2.3 1 23 580 602 580 602 0.98
6 18 0.00013 0.026 16.4 0.7 1 23 646 668 646 668 0.97
7 18 0.00035 0.068 15.1 0.1 1 23 674 696 674 696 0.97
8 18 4.6e-05 0.009 17.8 0.7 1 23 741 764 741 764 0.96
9 18 0.0024 0.47 12.4 1.7 1 23 770 793 770 793 0.96
10 18 1.3e-05 0.0025 19.6 2.0 1 23 799 822 799 822 0.98
11 18 0.00017 0.034 16.0 0.0 1 23 830 852 830 852 0.93
12 18 0.044 8.6 8.5 0.2 1 20 914 933 914 933 0.97
13 18 9.2e-05 0.018 16.9 0.2 2 23 953 974 952 974 0.97
14 18 2.4e-05 0.0046 18.8 1.2 1 23 987 1009 987 1009 0.97
15 18 0.00046 0.09 14.7 3.0 1 23 1031 1054 1031 1054 0.92
16 18 0.0079 1.6 10.8 1.2 2 23 1118 1140 1117 1140 0.94
17 18 0.00064 0.13 14.2 0.9 1 23 1159 1182 1159 1182 0.93
18 18 0.015 2.9 10.0 1.3 2 23 1272 1294 1272 1294 0.96

Sequence Information

Coding Sequence
ATGGAGGACGAGGACGTGGTGGAGATCGGGAACGTGGAGAGTGTCTGCCGGCTGTGTCTGTCCACGGACGGCCCGAGGTCCTCGGTGTTTGCCCAGGATGGAGAAGAGGAGGATACATCCGAGGTGGCTCTGGCTGCCAAGATCCAGGCTTGCCTGTCGATCCAGATTTCAGCCACCGATAGGCTGTCCACGCTGATATGCGCAAATTGCGTAAAGAATGTTAATCTGTGGCATACTTACAAGGAGTCATGTCTGCGTTCACAGGACAAGCTGCAAGAATGGCTGGAAAGCGAGTCTCAACTAAATCCTACGGTCATAACAATCAAGGATGAACCGATGGATATTGACTACGAGGACAATGTAGAGATTATTTTAGAGACTACCAATAACCCGGAACAAGCACGCTCGTTGCCTCAAATAGAGGAAAACAAGGAGACTGATAATAAGGAGGTACAAGAAGCAATAGATAAAACCGATGCGAATGACGCACATAAACAGAAAGACTCGGAGACAGTTCCATCTACTGCGGAGACAGTTCCGTCTACTGCGGAGACGGTTCCATCTATCGCGGAGATGGAGCCTGACAAAGATCAAGATCAGATAGATCAAAGTCAAATAGACAAAGGTCAAGTGGATCAGCAGGCTGCTACACCTCTACGTGCCATTAAAACCGAGCCACCAGACGACGACGATACCGATTGCACTATCGAATTAGAATCCTCGAATAGCAGCGAATTGTTATTGAATCCCATGGCGGCCACTGCGAAGGAGGACACGATTATGGAGGCCGATTCTACGCAAAAATCTAACGCAACTGGTGCGTTGCCCAAGAAGAAACTGAGACGCGGTCCTCACACCCATTTCAGAGGGGCGCGCGTCTTCAAGAAGAAGTGCACGCATTGTCAGATATTCCTGCATTCCAAATACTCGTACATGAAGCACATGAAGAGATTCCACAGCAAGGAGAACGGCGGCCTCGACAATTTGGAGTCGTTATCGCagaacgacgacgacgaagagaTGGTGGAGGATTTAGAGGAGGAATTAGTCAGCATGGAGAAGGACTCGCCGCTGACGCAGGTCCAGCAGGAGATTATCAGCCAGTTGAAAACCTTCTCCTGCTATTCCTGCGAACAGACATTCAACGATCGGCGTAGCACGCTTTCCCACATACGTCAGCACCTGCCGGATTTGAGACCGTACACGTGCATCGCTTGCTTGACTGAGTTTCCAGATCGATCCATGTATCAGTTACATTGCGGCGCGTCCTTCGAGTGCGCCATGAAGATCGCCCTGGTGGTGCCCAAGCACGGCAACGAGCGGTACTTTACATGCAACATGTGTCTACGTTCGATGCGCGACAGGAAGGAACTGCTGAGCCACCTGTCCAAGCATTCCGACAAGCAGTACGAGGAGATGATGTCGCCGGCGCGCGCACCACCCAAGCTGAAGCCGATGGCGCCATTGCCATCGTCGGCGAGAAGCAGTCCGGATAAAGCGCAGAAGACCAACGTCATCAACGGGCCTTACAAGAATGGCGATCCGGCGCACAATCACGCTTGCGATCTATGCGGTATGATCTACAGATACCGACCCAACATGTTCAAGCATCGCGAGTTCTGTCAGAGGCTGCAGCCGGAGAATAGAATTTCGTACAAGTGCGTACACTGTTCCATGACGTTCCTCGTGTTCAAGAAGTTCCATACTCACATCACGGTCGATCACAAGAAGAAGGAGTTCACTTGCGTCGTGTGCAATTTGAAATTCCGATCGCCCAGCGATTACCTGACCCATCATGAGAAACATCGCGCGGCTACCCTAGCCGGCAATCGTCAGGTGACCCAGGACGACACACAGCCGAACGCAGTTCAGGCGCCGTTGAAGGAGCGAAACGTCAAATCGACCAAGACCAAGTCGAGAATCGGCGGCCAGAAGTACAGTTGCGCGCTCTGTACTCAAGAGTTCTCCACGAGGTCGGAGCTGACGGAGCACCGGAATCTTCATCTCAAGGTGAAGATATATTCCTGCGCCATTTGCCGCAGCATGTTCAGCAGCCCGGGCACGTTGGAGATCCACATGAAGGATCACGGTATCGAGGATCCGAATGAACGAAACGCCAACATCTCCTGCGTGGAGTACGGCAGCCTGGACGAGGACGCGAGGATCGACGAGAGGGACTCGATGAACGCCAGTGCCATCTCTGATCCCGGTACGCAGATTCACGAGTGCTCCGAGTGCGGTAAGGTGATGTCGAATTACGCCAATCTTCGCCGACACACCAAGATCGCTCATCGGAACGCCAAGATCTACGACTGCGTTGAATGCTCGCTGATGTTTACACGTAAGGAGCTCTACGATCACCATATGCAGATCAAACACAACTCGAAGACGACGTTCCAGTGTCCCCAGTGTCCCAAGCAATTCGTCTTCCAGTCGAACTTCACCTATCACTTCCGCACCGCCCACCTGGAGAAGTCGCAAAACGGTTACGCCTGCGACATCTGCGGCAAGGTTTTCGTCGAGGAGGCATCGCTGAAAATACACAGGGGCTGGCACAATCGCGCCAACTCTCGTCTGAGCACGCGATTCATTCTGGGTAAGCGAAAGACGCCCGATAACGAGTCGCAGATGAAATCGGCCGGCGTCGAATCAGCCGAGAATACGGAACGACCGGCGAGAGCGCGAAAATCCTTCCCCAATCCTCCGCTCCAGTCAATGATGACGTCGTCGGAGGGGAATTTCCAGTGTCAAGTATGCAACGACAGATTCAACAACGTCGCGGAGCTGAGGAACCACCTGTGGGACGTCCATTGCGCCCGCAACAAGCCGGAGAAGAGCTTCTCCAACGACGAGCTTCAGTGCGAGCTCTGCACGAACGTCTTCCCCGATCAGGAGACCCTGACGTCGCACATGCGATGGCACAAGGCCAACCCGATTCTCAGCGACATGCGGAAGACGTACTCTTGCGACGTGTGCGGCAAGTCTTACAGCTCGAAGAAGGTTCTGTGGAAGCACAAGAAGCTGCACAAGGCCACCGTCGTAGCGTCGGTCAAGTTCCAGTCCCTGGCCAGGAAACCGATGGCTAGCCAATTCCTCTGCAACTTCTGCCGGAAGGTCTTCTCCAGCAACCAGTCGCTGCAACGACATAAACTCAACTTCCACAGCGATCTGCAGAACCCGCAACGGCAGCAACCGCAGCAACAATTGTACAACAGCAGTCGCAGATTGTCTCACGACGACGTCGAGCAGCCGAGGACGAAACGTATGAAGTTCGAGATGGACGCCGACAATTTACCGTCCAAGCTGTCGCCATTCGCCATGGATTTTGCCGGCGAGAGGAGGAAGCCGGTAATGTGTCACGTGTGCAAGAAGATATTCCCGAACATGAGCGTGCTGTACAAGCACAAGCAGAACGTGCACAAGCGTAAAAATGTAATACCCGAATGTATACCGATGTCGACTCAGGACGGCAAGTTCTCGTGCAACATCTGCTACAAGGAGTTCCCCGGCCTGTCGAATCTGCGACAGCACTTTACCATCAAGCACAAGAAGACCTCGGAAGCCAATCATCCGCCGCCTAGCATCGAAGTCCTCCCTCCTCCTGAACGACCCGCGAAGGAAGTCTCCGAGTTGCCGGTCCACAACAACTTCATGTTCAGCTGCAAGCTGTGCAAGCAGTGCCATGTCTTCAACAGGGAGGCGATCATGAATCACATCACCAATGTGCACAACGCGGTGTACCAGGCCGACAGCAGGACGTTCCACAGGGAGATCAATCTGAGCGGCTACGTGGTGAAGGGGGCGGTCGGGGCCACGTGTCCCCGATGTCACGTCAAGTATCCCAACAACCGGGCCCTGAAGATACACTACATCAAGTTCCACGAGACTGCCGATTAA
Protein Sequence
MEDEDVVEIGNVESVCRLCLSTDGPRSSVFAQDGEEEDTSEVALAAKIQACLSIQISATDRLSTLICANCVKNVNLWHTYKESCLRSQDKLQEWLESESQLNPTVITIKDEPMDIDYEDNVEIILETTNNPEQARSLPQIEENKETDNKEVQEAIDKTDANDAHKQKDSETVPSTAETVPSTAETVPSIAEMEPDKDQDQIDQSQIDKGQVDQQAATPLRAIKTEPPDDDDTDCTIELESSNSSELLLNPMAATAKEDTIMEADSTQKSNATGALPKKKLRRGPHTHFRGARVFKKKCTHCQIFLHSKYSYMKHMKRFHSKENGGLDNLESLSQNDDDEEMVEDLEEELVSMEKDSPLTQVQQEIISQLKTFSCYSCEQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGNERYFTCNMCLRSMRDRKELLSHLSKHSDKQYEEMMSPARAPPKLKPMAPLPSSARSSPDKAQKTNVINGPYKNGDPAHNHACDLCGMIYRYRPNMFKHREFCQRLQPENRISYKCVHCSMTFLVFKKFHTHITVDHKKKEFTCVVCNLKFRSPSDYLTHHEKHRAATLAGNRQVTQDDTQPNAVQAPLKERNVKSTKTKSRIGGQKYSCALCTQEFSTRSELTEHRNLHLKVKIYSCAICRSMFSSPGTLEIHMKDHGIEDPNERNANISCVEYGSLDEDARIDERDSMNASAISDPGTQIHECSECGKVMSNYANLRRHTKIAHRNAKIYDCVECSLMFTRKELYDHHMQIKHNSKTTFQCPQCPKQFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGKRKTPDNESQMKSAGVESAENTERPARARKSFPNPPLQSMMTSSEGNFQCQVCNDRFNNVAELRNHLWDVHCARNKPEKSFSNDELQCELCTNVFPDQETLTSHMRWHKANPILSDMRKTYSCDVCGKSYSSKKVLWKHKKLHKATVVASVKFQSLARKPMASQFLCNFCRKVFSSNQSLQRHKLNFHSDLQNPQRQQPQQQLYNSSRRLSHDDVEQPRTKRMKFEMDADNLPSKLSPFAMDFAGERRKPVMCHVCKKIFPNMSVLYKHKQNVHKRKNVIPECIPMSTQDGKFSCNICYKEFPGLSNLRQHFTIKHKKTSEANHPPPSIEVLPPPERPAKEVSELPVHNNFMFSCKLCKQCHVFNREAIMNHITNVHNAVYQADSRTFHREINLSGYVVKGAVGATCPRCHVKYPNNRALKIHYIKFHETAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00110015;
90% Identity
-
80% Identity
-