Cflo002166.1
Basic Information
- Insect
- Camponotus floridanus
- Gene Symbol
- -
- Assembly
- GCA_003227725.1
- Location
- NW:2904673-2911292[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.21 17 5.6 6.9 2 23 271 293 270 293 0.97 2 19 0.025 2 8.5 2.2 1 23 345 367 345 367 0.97 3 19 0.018 1.4 9.0 1.5 1 23 416 438 416 438 0.98 4 19 0.019 1.5 8.9 0.1 1 20 488 507 488 508 0.94 5 19 7.7 6.2e+02 0.7 4.6 1 23 521 544 521 544 0.88 6 19 0.0058 0.46 10.5 2.2 1 23 549 571 549 571 0.97 7 19 0.00031 0.024 14.5 0.8 1 23 616 638 616 638 0.97 8 19 0.00023 0.018 14.9 0.1 1 23 644 666 644 666 0.97 9 19 2.6e-05 0.0021 17.9 0.7 1 23 711 734 711 734 0.96 10 19 0.0016 0.13 12.2 3.5 1 23 740 763 740 763 0.95 11 19 3.4e-06 0.00027 20.7 1.0 2 23 770 792 769 792 0.97 12 19 0.00017 0.013 15.3 0.0 1 23 800 822 800 822 0.92 13 19 0.039 3.1 7.9 0.3 1 20 884 903 884 903 0.97 14 19 0.001 0.08 12.9 0.3 2 23 923 944 922 944 0.96 15 19 1.3e-05 0.0011 18.8 1.2 1 23 957 979 957 979 0.97 16 19 0.0016 0.13 12.3 2.3 1 23 1001 1024 1001 1024 0.93 17 19 0.0027 0.21 11.5 2.5 2 23 1083 1105 1082 1105 0.96 18 19 0.0004 0.032 14.1 1.0 1 23 1127 1150 1127 1150 0.93 19 19 0.0049 0.39 10.7 0.4 2 23 1240 1262 1240 1262 0.96
Sequence Information
- Coding Sequence
- ATGGAGGACGAGGACGTGATGGAGATCGGGAACGTGGAGAATGTCTGCCGGCTGTGTCTGTCCGTGGACGAGCCGAGGTCCTCGGTGTTCGCGCAGGATCGAGAGGAGGACCCGTCCAGCGTGTCGCTGGCCGCCAAGATCCAGGCTTGCTTGTCGATCCAGatttcACCCACTGATAAATTGTCCACGCTGATATGCGCAAATTGTGTGAAGAATGTTAATCAATGGCATACTTACAAGGAATCATGTCTGCGTTCACAGGATAAGCTGCAAGAATGGCTAGCCACCCAATCGCAATCAAATCCTACAGTTATAACAATCAAAGACGAACCAATGGATGTTGATTATGAAGATAATGTAGAAATTATCTCGGAGACTACCAATAACTTGGAACAAGCAcATTCACCGATTCAAACAGTGGAAAACAAGGAAACTGATAATAAAGAAGTTCAAAAAATAGATGAAAATGATGCAAATGACACACATAAAGAGAATGACTCGGAGACAGTTCCATCTGCAACAGAAATGCAGTCTGAAAAAGACCAAAATCAAATTGATCAGCAAGATACTGCAGCTCTATGTTCCATTAAAATCGAGCCACAGGACGATGATGATACCGATTGCACTATCGAAGTAGAATCTGCGAACGAtagtgaattattattaaatcccATGGCAGTTTCCACAAAGGAAGACACGGTTATGGAAGCCGATTCTACGCAAAAGTCTAACGCAGCTAGCTCGCCGCCTAAGAAGAAATTCAGACGCGGTCCTCATACTCATTTCAGAGGAACGCGCGTCGTTAAAAAAAAGTGCACGCATTGTCAAATATTCTTGCATTCCAAATACTCATATATAAAGCACATGCAGAGATTCCACAGCAAGGAGAACGGCGGTATCGAAAATTTGGAGTCGATATCGCAGAATGATGACGAAGAGATGGTGGAAGATTTAGAAGACGAGTTGGTCAGTATGGAGAAAGACTCGCCACTGACGCAGGTCCAACAGGAAATTATCAGCCAGTTGAAAACATTCTCTTGCTATTCCTGCGAACAAACATTCAACGATCGGCGTAGCACGCTCTCCCACATACGCCAACATCTACCGGATTTGAGACCGTACACGTGCATTGCTTGTTTAACCGAATTTCCCGATCGATCCATGTACCAATTACATTGTGGCGCGTCCTTTGAATGTGCCATGAAGATTGCCTTGGTAGTACCCAAACATGGTAACGAGCGGTACTTCACCTGTAATATGTGCCTACGTTCAATGCGCGATAGAAAGGAGTTGTTGAGTCATTTGTCGAAACATTCTGACAAGCAATACGAGGAAATGATGTCGCCAGCACGCGCACCACCCAAGCTGAAACCGATGGCGCCCTTGCCATCCGAGAAAAGCAGTTCCGATAAAACGAAGACTGTCAGCGGACCTTACAAGAATGGCGATCCAGCGCACAATCATGTCTGTGATCTATGTGGCATGATTTACAGATATCGACCCAATATGGTTAGACATCGCGAGTTTTGCATGCGGTTGCTACCGGAAAATAGAACATCGTACAAGTGCGCGCACTGTTCCATGACGTTCCTTGTGTTCAAGAAATTCCATACTCATATCACAGTTGATCACAAGAAGAAGGAGTTTACTTGCGTCGTGTGCAACTCGAAATTCCGATCGCCCAGCGATTACTTGACTCATCACGAGAATCATCGCGCGGCGACACACGACGGCAATCGTCAAACACAAGACACGTCACGAAACGAAGTTCAGGCGCCATTGAAGGAACGGAATGCCTACCGAGGGGACGCCAATCCGCCTAAGTCGAGACTCGGTAGTCAAAAGTATAGTTGTGCGCTCTGCACCCAGGAATTTTCCACAAGGACTGAGTTAACAGAGCATCGGAATCTCCATCttaaagtgaaaatatattcgtgCGCCATTTGTCGCAGCATGTTCAGTAGTCCTGGCGCGTTGGAGATCCATATGAAGGATCACGGCATCGAGGACCCGAATGAACGAAACGCTAATATCTCTTGCGTGGAGTACGGCAACTTGGATGAGGATGTGAGGATCGATGAGAAAGATTCGATGAACGCTAGTGCCGTCTCGGATCCTGGTACAAAGATTCATGAATGCTCTGAGTGCGGTAAGGTAATGTCAAATTACGCTAATCTTCGCCGACACACCAAGATCGCTCATCGGAATGCCAAGATATATGATTGTTACGAGTGTTCGCGAATGTTTACGCGTAAGGAGATGTACGACCACCatatgcagctcaaacacaagTCGAAGGCAATGTTGCAATGTCCCCAGTGTCCCAAGAGTTTCGTCTTCCAGTCGAACTTTACTTATCACTTTCGCACTGCCCACCTTGAGAAATCGCAAAATGGTTACGCTTGCGACATTTGCGGCAAGGTTTTCGTGGAGGAGGCATCTTTGAAGATACACAAGGGTTGGCATAATCGCGCCAACTCTCGTTTGAGCACACGATTCATACTAGGTAATCAGAAGGCGTCAAATAACGAATTACAAATGGAATCAGTCAGCGGCGAATCGGGTGAAAATTCGGAACGTCCGGCAAGAGCACGAAAGTCATTTCCCAATCCTCCGCTTCAATCAGCGACGACGTCGTCAGAGGGGAATTTCCAATGTCAAGTATGCAATGACAAGTTCAACGATGTTACGGAGTTGAGAAACCATCTATGGGATGTTCATTGCGCCCGTAACAAACCAGAGAAGAATTTCTGCAATGATGAGCTCCAGTGCGAGCTCTGCACGAACGTTTTCCCCGATCAGGAAACTTTGGCGTCACACATGCATTGGCACAAGGCCAACCCGATTCTCAGCGACATAAGAAAAGCGTACTCTTGCGACGTATGCGGCAAGTCTTACAGCTCGAAGAAGGTCTTGTGGAAACACAAGAAGCTGCACAAGGCTACTGTCGTAGCGTCGATCAAGTTCCAATCCTTAGCCAGGAAACCGATGGCTAGCCAATTTCTTTGTAACTTTTGTCGGAAGGTCTTCTCTAGCGGCCAATCGTTACAACGGCACAAGCTCAGCTTCCACAACGAGCTACAGAGTTCACAACGGACTCAGCAACAATTGTACAATAGCAATCGTAAATTGTCGTACGAAGATGAACCGAGACCAAAACGTATGAAACTCGAGATCGACGACGATAATCCGCCTAAACTGCCGCCTTTTGCCATGGATTTTGCCGGTGAGAGGAGGAAGCCGGTTATGTGTCATTTGTGTAAGAAGATGTTTCCGAATATGAGCGTACTGTACAAGCATAAACAAACCACACACAAGCATCGAGCGAGGAAGGATGTGATACCCGAATGCATACCGATGTCGACTCAGGATGGCAAGTTCTCGTGCAACATCTGCTTCAAGGAATTTCCAGGCCTATCGAATCTGCGACAGCACTTCACCATTAAGCACAAGAAGGGCCCGAGATCCAGTCATCCCCCGTCGAACAGCGACGCAACCCCCGAACGACCAATACGACCGACGAAGGAACCCGAGTCGCCGACTCACAATAACATCTTGTTCAGCTGCAAACTGTGCAAGCAGTGTCACGTCTTCAACAAAGAGGCGATCATAAATCACATCACTACTGTGCACAACGCGGTGTATCAGGCCGACAGTAGGACGTTCCACAGAGAGGTCAATCTGGGCGGTTACGTAGTGAAGGGTGCGATCGGGGCTACATGTCCGCGATGCAACGTCAAGTATCCCAACAACCGGGCTCTAAAGATACACTACATCAAGTTCCACGAGAACGCCGATTAA
- Protein Sequence
- MEDEDVMEIGNVENVCRLCLSVDEPRSSVFAQDREEDPSSVSLAAKIQACLSIQISPTDKLSTLICANCVKNVNQWHTYKESCLRSQDKLQEWLATQSQSNPTVITIKDEPMDVDYEDNVEIISETTNNLEQAHSPIQTVENKETDNKEVQKIDENDANDTHKENDSETVPSATEMQSEKDQNQIDQQDTAALCSIKIEPQDDDDTDCTIEVESANDSELLLNPMAVSTKEDTVMEADSTQKSNAASSPPKKKFRRGPHTHFRGTRVVKKKCTHCQIFLHSKYSYIKHMQRFHSKENGGIENLESISQNDDEEMVEDLEDELVSMEKDSPLTQVQQEIISQLKTFSCYSCEQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGNERYFTCNMCLRSMRDRKELLSHLSKHSDKQYEEMMSPARAPPKLKPMAPLPSEKSSSDKTKTVSGPYKNGDPAHNHVCDLCGMIYRYRPNMVRHREFCMRLLPENRTSYKCAHCSMTFLVFKKFHTHITVDHKKKEFTCVVCNSKFRSPSDYLTHHENHRAATHDGNRQTQDTSRNEVQAPLKERNAYRGDANPPKSRLGSQKYSCALCTQEFSTRTELTEHRNLHLKVKIYSCAICRSMFSSPGALEIHMKDHGIEDPNERNANISCVEYGNLDEDVRIDEKDSMNASAVSDPGTKIHECSECGKVMSNYANLRRHTKIAHRNAKIYDCYECSRMFTRKEMYDHHMQLKHKSKAMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRFILGNQKASNNELQMESVSGESGENSERPARARKSFPNPPLQSATTSSEGNFQCQVCNDKFNDVTELRNHLWDVHCARNKPEKNFCNDELQCELCTNVFPDQETLASHMHWHKANPILSDIRKAYSCDVCGKSYSSKKVLWKHKKLHKATVVASIKFQSLARKPMASQFLCNFCRKVFSSGQSLQRHKLSFHNELQSSQRTQQQLYNSNRKLSYEDEPRPKRMKLEIDDDNPPKLPPFAMDFAGERRKPVMCHLCKKMFPNMSVLYKHKQTTHKHRARKDVIPECIPMSTQDGKFSCNICFKEFPGLSNLRQHFTIKHKKGPRSSHPPSNSDATPERPIRPTKEPESPTHNNILFSCKLCKQCHVFNKEAIINHITTVHNAVYQADSRTFHREVNLGGYVVKGAIGATCPRCNVKYPNNRALKIHYIKFHENAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110015;
- 90% Identity
- iTF_00264484;
- 80% Identity
- -