Lful008124.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasius fuliginosus
Gene Symbol
-
Assembly
GCA_949152495.1
Location
OX424444.1:18991280-18996086[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.77 1.2e+02 4.6 8.0 2 23 293 315 292 315 0.97
2 18 0.044 6.8 8.5 2.2 1 23 368 390 368 390 0.97
3 18 0.032 4.8 8.9 1.5 1 23 439 461 439 461 0.98
4 18 0.058 8.8 8.1 0.4 1 20 513 532 513 534 0.92
5 18 0.16 24 6.7 2.5 1 23 574 596 574 596 0.95
6 18 0.00061 0.094 14.3 1.8 1 23 642 664 642 664 0.96
7 18 0.00041 0.062 14.9 0.1 1 23 670 692 670 692 0.97
8 18 5.8e-05 0.0088 17.5 1.5 1 23 736 759 736 759 0.96
9 18 0.015 2.2 10.0 2.1 1 23 765 788 765 788 0.92
10 18 6.1e-06 0.00093 20.6 1.0 2 23 795 817 794 817 0.97
11 18 0.0003 0.046 15.3 0.0 1 23 825 847 825 847 0.92
12 18 0.069 11 7.9 0.3 1 20 909 928 909 928 0.97
13 18 0.00035 0.054 15.1 0.1 2 23 948 969 947 969 0.97
14 18 2.4e-05 0.0036 18.8 1.2 1 23 982 1004 982 1004 0.97
15 18 0.00046 0.071 14.7 3.0 1 23 1026 1049 1026 1049 0.92
16 18 0.0042 0.65 11.7 1.5 2 23 1109 1131 1108 1131 0.96
17 18 0.00071 0.11 14.1 1.0 1 23 1153 1176 1153 1176 0.93
18 18 0.0087 1.3 10.7 0.4 2 23 1264 1286 1264 1286 0.96

Sequence Information

Coding Sequence
ATGGAGGACGAGGACGTGGTGGAGATCGGGAACGTGGAGACTGTCTGCCGGCTGTGTCTGTCCGCGGACGAGCCGAGGTCCTCGGTATTCGCGCAGGACCGAGAGGAGGACTCGTCCGGCCTGCCGTTGGCCGCCAAAATCCAGGCTTGCCTGTCGATTCAGATTTCAACCACTGATAGGTTGTCCACGCTGATATGTGGAAATTGCGTAAAGAATGTTAATCAGTGGCATACTTACAAGGAGTCATGTCTGCGTTCACAGGACAAGCTGCAAGAATGGCTGGCAAGCGAGTCGCAATTAAATCCTATGGTTATAACAATCAAGGATGAACCAATGGATATTGACTATGAGGACAATGTAGAGATTATATCAGAGACTATCAATAACTCGGAACAAACAcATTCACCACCTCAAGTAGTGGAAAACAAGGAGTCTGATAATAAAGAAGCGCAAGAAGTAGATGAAATAAATACGCAAGAGGTAGATGAAGTAGATGcgcaagaaataaatgaagTAGATTCGCAAGAAGTAGATGAAGTAGATGACGCACATAAACAGAAAGACTCTGAGACAGTTCCACCTGCCGCGGAGATGCATCCTGACAAAAACCAAGATCAAATGGATCAACAGGATTCTACAGCTCTACGTCCCATTAAAACCGAGCCACAGGACGATGACGATACCGATTGCACTATCGAAGTAGAATCCACGAACGGCagtgaattattattgaatcCCATGGCGGTTGCGACGAAAGAAGATACGGTTATGGAGGCTGATTCTACGCAAAAATCTAACGCAGCTGGCGCGCCACCCAAGAAGAAATTCAGACGCGGTCCTCACACCCATTTCAGAGGAACGCGCGTCTTTAAGAAGAAGTGCACGCATTGTCAGATATTCCTGCATTCCAAATACACGTACATGAAGCATATGAAGAGATTCCACAGCAAGGAGAATGGCGGCATTGACAACTTGGAGTCGATATCAcagaacgacgacgacgaagagaTGATAGAAGATTTAGAAGACGAGTTAGTTAGCATGGAGAAGGACTCGCCGCTGACGCAGGTCCAACAGGAAATTATCAGCCAATTGAAAACATTCTCCTGCTATTCCTGCGAACAGACATTCAACGATCGGCGTAGCACGCTCTCCCACATACGCCAACATCTACCGGATTTGAGACCATACACGTGTATTGCTTGCTTGACTGAGTTCCCTGATCGATCCATGTATCAATTACATTGCGGCGCGTCTTTCGAGTGCGCAATGAAGATTGCTCTGGTAGTGCCCAAGCATGGTGACGAGCGATACTTCACGTGCAACATGTGCCTGCGCTCGATGCGCGACAGGAAGGAACTGCTGAGTCACTTGTCGAAACATTCTGACAAGCAGTACGAGGAGATGATGTCGCCGGCGCGCGCGCCACCCAAGTTGAAACCGATGGCACCGTTGCCGTCCGCGAGAAGCAACTCCGATAAAGCGCAGAAGACCGTCATCAGCGGGCCTTATAAGAACGGCGATCCGGCACACAATCATGCTTGCGATTTATGCGGTATGATTTACAGATATCGACCCAATATGTTTAAGCATCGTGAATACTGTATGCGGCTGCAGCCGGAAAATAGAACGTCGTATAAGTGCGTACACTGTTCCATGACGTTCCTCGTATTCAAGAAGTTCCATACTCACATCACGGTTGATCACAAGAAGAAGGACTTCACTTGCATCGTGTGCAACTCGAAATTCCGATCGCCCAGCGATTACTTGACTCATCACGAGAAACATCGCGCGGCGATGCATGGCGGCAATCGTCAGACGCAGGACGACACGTCGCGGAACGCAGTTCAGGCTCCGTTGAAGGAGCGAAACGCCTACCGAGGAAACGCCAAGCCGGCCAAGTCGAGAATTGGCGGTCAAAAGCACAGTTGCGCGCTTTGCACCCAAGAATTCTCCACGAGGTCCGAGCTGACGGAGCACCGGAATCTCCATCTCAAGGTGAAGATATATTCGTGCGCCATTTGCCGCAGCATGTTCAGCAGCCCGGGCGCGTTGGAGATTCACATGAAGGATCACGGCATCGAGGACCCGAATGAACGAAACGCCAATATCTCCTGCGTGGAGTATGGCAGCCTGGACGAGGACGCGAGGATCGAGAAGGACTCGATGAACGCCAGTGCCATCTCAGATCCCGGTACGCAGATTCACGAGTGCTGCGAGTGCGGTAAGGTGCTGTCAAATTATGCCAATCTCCGCCGACACGCCAAGATCGCGCATCGGAACGCCAAGATCTACGATTGTATCGAATGCTCGCGGATGTTTACGCGGAAGGAGCTGTACGATCACCATATGCAGATTAAACACAACTCGAAGACGATGCTGCAGTGTCCCCAGTGTCCCAAGAGTTTTGTCTTCCAGTCGAACTTTACCTATCACTTTCGCACCGCCCACCTTGagaaatcgcaaaacggttaTGCGTGCGACATCTGCGGCAAGGTTTTTGTCGAAGAGGCATCGCTGAAAATACACAAGGGCTGGCATAATCGCGCCAACTCTCGTCTGAGCACGCGATTCATCCTGGGCAATCAGAAGACACCCGATGACGAGTCGCAGATGGAATCGGTCGGCGTCGAATCGGGCGAGAATTCGGAACGGCCGGCGAGAGCGCGAAAGTCCTTCCCAAATCCTCCGCTTCAATCACCGACGACGTCGTCGGAGGGGAATTTCCAGTGTCAAGTATGCAATGACAAATTCAACGACGTCACGGAGCTGAGGAACCACCTGTGGGACGTCCATTGCGCCCGCAACAAACCGGAGAAGAATTTCTCCAACGACGAACTCCAGTGCGAGCTCTGCACGAACGTCTTCCCCGATCGGGAGACCTTGGCGTCGCACATGCGATGGCACAAGGCCAACCCGATTCTCAGCGACATACGAAAGACGTACTCTTGCGATGTGTGCGGCAAATCTTACAGCTCGAAGAAGGTCTTGTGGAAGCATAAGAAGCTACACAAGGCCACTGTCGTAGCGTCGATCAAGTTCCAGTCCTTGGGCAGGAAACCGATGGCCAGCCAATTTCTCTGCAACTTTTGCCGGAAGGTCTTCTCCAGCAACCAGTCGCTGCAACGACACAAGCTCAACTTTCACAGCGACCTGCAGAACCCGCAACGGGCGCAGCAACAATTGTACAATAGCAGTCGTAGATTGTCGCACGAGGACGAGCCGAGAACGAAGCGTATGAAGCTCGAGATCGACGATGACAATCTGCCACCCAAGCTGCCGCCCTTCGCCATGGATTTCGCCGGCGAGAGGAGGAAGCCGGTCATGTGCCACTTGTGTAAGAAGATATTCCCGAATATGAGCGTGCTGTACAAGCACAAGCAGACCGTGCACAAGCATCGAGGGAGGAAAGACCTGATACCCGAGTGCATACCGATGTCGACCCAGGATGGCAAGTTCTCGTGCAATATCTGCTTCAAGGAGTTTCCCGGCCTGTCGAATCTGCGACAGCACTTTACGATCAAGCACAAGAAGAGCTTGGAATCCAATCATCCGCCGCCGAGTAGCGACGTGCTCCCCGAAAGACCGACGAAGGAACCCGAGTTGCCGCCGGTCCACAATAACATCATGTTCAGCTGCAAGCTGTGCAAGCAGTGCCACGTCTTTAGCAGGCAAGCGATCATGAATCACATCACTACTGTGCACAACGCGGTTTACCAGGCCGACAGTAGGACGTTCCACAGGGAGATCAATCTGGGCGGTTACATGGTGAAGGGCGCGATCGGGGCCACGTGTCCGCGATGCAACGTCAAGTATCCCAACAACCGGGCCTTAAAGATACACTACATCAAGTTCCACGAGAATGCCGATTAA
Protein Sequence
MEDEDVVEIGNVETVCRLCLSADEPRSSVFAQDREEDSSGLPLAAKIQACLSIQISTTDRLSTLICGNCVKNVNQWHTYKESCLRSQDKLQEWLASESQLNPMVITIKDEPMDIDYEDNVEIISETINNSEQTHSPPQVVENKESDNKEAQEVDEINTQEVDEVDAQEINEVDSQEVDEVDDAHKQKDSETVPPAAEMHPDKNQDQMDQQDSTALRPIKTEPQDDDDTDCTIEVESTNGSELLLNPMAVATKEDTVMEADSTQKSNAAGAPPKKKFRRGPHTHFRGTRVFKKKCTHCQIFLHSKYTYMKHMKRFHSKENGGIDNLESISQNDDDEEMIEDLEDELVSMEKDSPLTQVQQEIISQLKTFSCYSCEQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGDERYFTCNMCLRSMRDRKELLSHLSKHSDKQYEEMMSPARAPPKLKPMAPLPSARSNSDKAQKTVISGPYKNGDPAHNHACDLCGMIYRYRPNMFKHREYCMRLQPENRTSYKCVHCSMTFLVFKKFHTHITVDHKKKDFTCIVCNSKFRSPSDYLTHHEKHRAAMHGGNRQTQDDTSRNAVQAPLKERNAYRGNAKPAKSRIGGQKHSCALCTQEFSTRSELTEHRNLHLKVKIYSCAICRSMFSSPGALEIHMKDHGIEDPNERNANISCVEYGSLDEDARIEKDSMNASAISDPGTQIHECCECGKVLSNYANLRRHAKIAHRNAKIYDCIECSRMFTRKELYDHHMQIKHNSKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHKGWHNRANSRLSTRFILGNQKTPDDESQMESVGVESGENSERPARARKSFPNPPLQSPTTSSEGNFQCQVCNDKFNDVTELRNHLWDVHCARNKPEKNFSNDELQCELCTNVFPDRETLASHMRWHKANPILSDIRKTYSCDVCGKSYSSKKVLWKHKKLHKATVVASIKFQSLGRKPMASQFLCNFCRKVFSSNQSLQRHKLNFHSDLQNPQRAQQQLYNSSRRLSHEDEPRTKRMKLEIDDDNLPPKLPPFAMDFAGERRKPVMCHLCKKIFPNMSVLYKHKQTVHKHRGRKDLIPECIPMSTQDGKFSCNICFKEFPGLSNLRQHFTIKHKKSLESNHPPPSSDVLPERPTKEPELPPVHNNIMFSCKLCKQCHVFSRQAIMNHITTVHNAVYQADSRTFHREINLGGYMVKGAIGATCPRCNVKYPNNRALKIHYIKFHENAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00110015;
90% Identity
iTF_00868294;
80% Identity
-