Aips014669.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- lrrfip2
- Assembly
- GCA_028554685.1
- Location
- CM052968.1:15598404-15604747[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-80 3.9e-76 257.2 26.7 1 297 28 317 28 319 0.90 2 2 0.47 1.7e+04 -4.3 15.7 1 49 316 363 316 384 0.72
Sequence Information
- Coding Sequence
- ATGACTCAAAGTGTTAAGGACCGGGTTTACAAGTGGGTGACTGTGGTATCGTTATCTAAACTTGTTCTGCATTCTTTCCAGGCAGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGAGCGGAGGCGCGGGAAATACGTATGAGGGAACTGGAGAGGCAGCAGCGGGAACAGGAGGACCATGCCGACAAGGCGTACGATATGTATGCGGGAAAGACGCCAGAGACGGTGGGACGCCGCGGCGCTACGAGGCTGACGGCGCTCAGCCCGGCCGTGCACTCTCCCAGGCGAAGCTCTGAGGACTCCATCGATGACGGCTTCAGCATCAAGGACCTTAGGCACGAGTTAAAGGAGGTTGAGGAGAAGTTCCGTAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAATTGCTCAAGGATCGGATAGAGGAGCTGCACGAGGAGTATGCACAGCTGCAGCGCGAACACAGAGAAAAATGCTCATCATTCGAGCGTCTAAAGCGCGAGCATGAATCTGTGTCCCGCGAGCTCAGTGCCGCTCGGGACGCAGTACGTGCGCGGGACGCGGCGGCCGCCAGCGCGGGCTTCGCCTTCGTGGACGCGGCCGCTCTGGAGCCAGCCGCGCGGGAGTCAGCCGGGGCCGCCGTGGGAGAGGTGCCCTCGCTGGCGCTGGTGACACACCAGGCTGAACAGCTGCTTAATGATGCCGGGGAGGGGACACTTGACGTGCGGTTGCAAAAGCTGCTGAGCTCAAAGCAGGCGTTGGAGTCAGAGGTGCGCAAACTGAAGTTGCAGCTGAACGAGGAGCGAGCTGCACGACAGAACGGAGTCACCAACCATCACGACCAGGAGTACGAGAATGAACTGGAGACAGTCCGCAAGGCAGTATCGGAGGCGAAGGGCCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTCGGGGCGGCGCACGTGGCGCGCCTGGAGGCACAGCTCGCGCGGCTGAGGGCGCGCCAGGAGCACCAGGACGAACACGAGGAGCAGCTCAAGCAGGAGCGACGCAAGCTGCAGAGAGAGGCTCGGGAAGCACTGAACCGGGTTGAGGAGTTGGAAACAGAAAACAGTCATCTTACGAAACGACTGGACAAACTCAAGAACGCGAAGTCAGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MTQSVKDRVYKWVTVVSLSKLVLHSFQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSIDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVSRELSAARDAVRARDAAAASAGFAFVDAAALEPAARESAGAAVGEVPSLALVTHQAEQLLNDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALGAAHVARLEAQLARLRARQEHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00040839; iTF_00689413; iTF_00758189; iTF_01362447; iTF_00071452;
- 90% Identity
- iTF_00745719;
- 80% Identity
- -