Aocu018801.1
Basic Information
- Insect
- Amphipoea oculea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_945859585.1
- Location
- CAMAOF010000184.1:867300-876562[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-69 4e-65 220.4 13.8 20 297 1 271 1 273 0.89 2 2 2 2.3e+04 -8.5 16.1 1 44 270 313 270 348 0.61
Sequence Information
- Coding Sequence
- ATGCGTGAGCTGGAGAGGCAGCAGCGCGAACAGGAAGACCATGCCGACAAGGCATACGATATGTATGCTGGCAAGACACCAGAGACGGTGGGTCGTCGAGGCGCTACGAGGCTGACGGCGCTCAGCCCAGCCGTGCACTCACCGAGACGAAGCTCTGAAGACTCCGTTGATGATGGCTTCAGCATCAAGGACCTTAGGCATGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCCGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAACACAGAGAAAAATGCTCATCCTTCGAGCGTCTAAAGCGGGAGCACGAGTCGGTAACTCGCGAGCTGAGCGCGGCACGAGACGCCGTGCGAGCGCGAGACGCGGCGGCCGCGGGAGCGGGCTTCGCCTTCGTTGACGCCGCCGCGCTCGACGCGGCCGCGCGGGACACTGCGGGCGCGCCTGTCGGGGCCGTGCCCGCGCTCGCGCTGGTCACGCAGCAGGCGCACCAACTGCTCAGTGATGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAAAACCTGTTAACCTCGAAGCAGGGGCTGGAGTCAGAAGTACGCAAGTTGAAACTACAGCTGAATGAAGAACGCGCCGCCAGACAGAACGGAGTCGCCAACCATCACGACCAAGAGTACGAGAATGAACTGGAGACAGTCCGCAAGTCGGTGTCGGAGGCGAAGGGCCGCGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGCACGTGGCGCGGCTGGAGGCGCAGCTGGCGAGGCTGCGCGCGCGGCAGGAGCACCAGGACGGACACGAGGACCAGCTCAAGCAGGAGCGGCGTCGGCTGCAGCGGGAGGCTCGGGAAGCACTCAATCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACGAAACGACTCGACAAACTCAAGAACGCGAAGTCTGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSSFERLKREHESVTRELSAARDAVRARDAAAAGAGFAFVDAAALDAAARDTAGAPVGAVPALALVTQQAHQLLSDAGEGTLDVRLQNLLTSKQGLESEVRKLKLQLNEERAARQNGVANHHDQEYENELETVRKSVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQEHQDGHEDQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041796;
- 90% Identity
- iTF_00040839;
- 80% Identity
- -