Amar017165.1
Basic Information
- Insect
- Agriopis marginaria
- Gene Symbol
- -
- Assembly
- GCA_932301435.1
- Location
- CAKOAR010000179.1:807081-811606[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-11 5e-08 32.9 0.0 4 39 175 211 172 215 0.90 2 4 6.8e-12 1.2e-08 34.9 0.2 2 39 227 264 226 267 0.93 3 4 5.2e-16 9.2e-13 48.0 0.2 2 45 282 326 281 326 0.96 4 4 3.5e-18 6.1e-15 55.0 0.0 1 41 333 374 333 376 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGGACCGTTTCAAGTGAAATGCGAGCCGCCTTCTGACGAAGAAGATAACTGTCCTCAACTGTCTGATATATTTCCTAATAGTAAGCTTATCTCGGAATACCACTGTGTAAAAGTACAGACGGTCGGACAAAATGACGAAAGCCCTTCGACAGATTTGTTACAACATTTGCAGTCGTCATCGAGTCTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGGCCCGCTGCGACGCCAGTCTGCGTGAAGCAAGAGCCGGTAGATACCCCCGCCCTCACGCTTGAGACCCTTGAGTCCAACCCCCATAACACGGGAAGTTCGATACTGGAGAGACACAATATGGTGATGCTGAATTCTGCGGAAGAACTCGACTCTGCGAATTTCACACCGTTGATTATTAAAGATGAGCCTTCATCTGAGGGAGAGTTCCAACAACTGAGCAGCGACGAGACAAGCGACGGGTATCGCGAGGTGGAGTTGGCAGTGCGCGGCAGTCCCAAGAGCTGGACGCAACGTGACATGGACCACGCACTCGACGCGCTCCGGAACCACCACATGAGTTTGACCAAGGCATCAGCTACATACGGCATACCATCTACGACGCTGTGGCAACGCGCGCACCGTCTCGGCATCGACACACCTAAGAAAGAAGGCAGTGCCAAGTCGTGGTCCGAAACCGACCTGCGCGGGGCGCTCCATGCGTTACGAGCTGGAGCCATCTCCGCTAACAAGGCCAGCAAGGCGTATGGTATACCAAGCAGTACCCTGTACAAGATAGCTCGTCGTGAGGGCATCCGCCTCGCAGCTCCATTCAACGCGGCACCAGTGTCGTGGCGGCGCGGTGACCTGGCGCGTGCGCTGGCCGCCATCCGCGCCGGGGCTGCTTCAGTACAACGCGCCGCTGCACAGTACGGGATACCCACAGGAACTCTTTATGGACGATGTAAAAGAGAGGGTATAGAGCTGTCTCGGTCCAACCCCACGCCTTGGTCTGAGGATGCAATGGGAGAAGCTTTAGAAGCAGTCAGAGTGGGTCAAATGTCAATAAACCAAGCTGCTATTCACTATAACCTGCCTTACTCATCCCTCTACGGAAGATTCAAGAGATGCAAATATCTAGCTCATGCCCAGCCAATGGCACAGCAAGATATCTCCAGTAACCCCGAAACGGCGGTCTCTCAACAAGATGCATCCTATTACCACCAGACCCCACACATGGGGGAACCAGATCACAACATTGTCCAAAGCTACTCACAGAACGATTACATTCAGCATACATCGACGCACAACAACGTGTTAATACAAGATCCGTACGCCGGACAACCGATGTATTATAACCCAAACTTTAATGGCATTACCACTAGCTGA
- Protein Sequence
- MPGNGPFQVKCEPPSDEEDNCPQLSDIFPNSKLISEYHCVKVQTVGQNDESPSTDLLQHLQSSSSLEELAPLAPAGPAATPVCVKQEPVDTPALTLETLESNPHNTGSSILERHNMVMLNSAEELDSANFTPLIIKDEPSSEGEFQQLSSDETSDGYREVELAVRGSPKSWTQRDMDHALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSETDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLAHAQPMAQQDISSNPETAVSQQDASYYHQTPHMGEPDHNIVQSYSQNDYIQHTSTHNNVLIQDPYAGQPMYYNPNFNGITTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00818279; iTF_00032826; iTF_00926514; iTF_00205978; iTF_00206919; iTF_00666428; iTF_00390303; iTF_00826749; iTF_00825510; iTF_01172253;
- 90% Identity
- -
- 80% Identity
- -