Lhir025587.1
Basic Information
- Insect
- Lycia hirtaria
- Gene Symbol
- -
- Assembly
- GCA_947563715.1
- Location
- OX387385.1:36820299-36825033[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.8e-11 4e-08 33.5 0.0 4 39 146 182 143 186 0.90 2 4 5e-11 3.5e-08 33.7 0.3 2 39 198 235 197 238 0.92 3 4 4.5e-16 3.2e-13 49.8 0.2 2 45 253 297 252 297 0.96 4 4 7.9e-18 5.5e-15 55.4 0.0 1 41 304 345 304 348 0.94
Sequence Information
- Coding Sequence
- ATGCCTGGAAACGGACTGTTTCAAGTGAAATGCGAACCACCTTCTGATGACGAAGACAATTCTCCCCAGCTGTCTGATATTATATTTCCTAATAATAAGTCGTCATCTAGCTTGGAGGAGTTGGCACCGTTGGCACCTGCGGGCCCCGCCGCGACGCCGGTGTGCGTGAAGCAAGAGCCTGTCGATACCCCCGCTCTTACGCTAGAGATCCTTGAGTCCAGCCCACATAATACGGGAAGTTCAATACTGGAAAGACATAATATGAGGATGATGAATTCAGAGGACCTTGATTCTGCGAATTTTACGCCTTTGTCAATAAAGGACGAGCCTTCATCAGAAGGAGACTTTCAACAGCTAAGCAGTGACGAGACGAGCGATGGGTGCCGTGAAGTAGAGACATCGGCGCGTGGCAGCCCCAAGAGCTGGACGCAGCGAGACATGGATCAGGCGCTAGATGCACTGCGGAACCACCATATGAGCTTGACTAAGGCATCGGCCACATACGGAATACCTTCAACAACGTTATGGCAGCGCGCACACCGTCTCGGCATCGATACGCCTAAGAAGGAAGGCAGCGCTAAGTCGTGGTCGGAGGCCGACCTGCGAGGAGCGCTTCACGCACTGAGAGCTGGTGCTATCTCTGCTAACAAAGCTAGTAAAGCATATGGTATACCCAGCAGCACCCTGTACAAGATAGCGCGCCGCGAAGGCATCCGCCTGGCAGCTCCGTTCAACGCGGCGCCCGTGTCGTGGCGGCGCGGCGATCTGGCGCGGGCGCTGGCTGCCATCCGCACCGGAGCAGCTTCTGTGCAGCGAGCTGCTGCGCAGTATGGCATACCCACCGGAACTCTCTACGGACGATGTAAAAGAGAAGGCATAGAGCTATCTCGATCAAACCCTACACCCTGGTCTGAGGATGCGATGGGAGAAGCTTTAGAAGCAGTCAGAGTCGGTCAAATGTCAATAAATCAAGCAGCTATACACTACAACCTGCCATATTCATCCCTCTACGGACGATTCAAGAGATGCAAATATCTTACTCAGTCACAACCTGTAACACAAGAGATCCCAAATAATTCGGATTCAGCAGCCATTCAGCAAGACTTATCATATTACCATCAGATGCCACACATGCCACAATCAGACCACATCGTCCAAAACTACTCACACAGCGATTACGTTCAGCATACACCGATTCATAACAACGTAATAGTTCAAGATTCGTACGCGGGGCAAGCGATGTATTTTAACCAGGGCTTCAATGGCATTGCAACTAGCTGA
- Protein Sequence
- MPGNGLFQVKCEPPSDDEDNSPQLSDIIFPNNKSSSSLEELAPLAPAGPAATPVCVKQEPVDTPALTLEILESSPHNTGSSILERHNMRMMNSEDLDSANFTPLSIKDEPSSEGDFQQLSSDETSDGCREVETSARGSPKSWTQRDMDQALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRTGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLTQSQPVTQEIPNNSDSAAIQQDLSYYHQMPHMPQSDHIVQNYSHSDYVQHTPIHNNVIVQDSYAGQAMYFNQGFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033740;
- 90% Identity
- -
- 80% Identity
- -