Edef002140.1
Basic Information
- Insect
- Erannis defoliaria
- Gene Symbol
- -
- Assembly
- GCA_905404285.1
- Location
- FR990079.1:18088790-18093908[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-10 8.6e-08 32.4 0.0 4 39 175 211 172 215 0.89 2 4 7.1e-11 3.8e-08 33.5 0.3 2 39 227 264 226 267 0.92 3 4 2.1e-15 1.1e-12 48.0 0.2 2 45 282 326 281 326 0.96 4 4 1.2e-17 6.2e-15 55.3 0.0 1 41 333 374 333 377 0.94
Sequence Information
- Coding Sequence
- ATGCCTGGGAACGGATCATTTCAAGTCAAATGCGAGCCGCCGTCTGACGAAGAAGATAACTGTCCGCAGCTATCTGATATATTTCCTAATAGTAAGCTTCCCTCGGAATACCATTGTACTAAAGTAGAGACGGTCAGACGAAATGATGAAAGCCCCTCGGCAAATTTGTTGCAGCATTTGCAGTCGACATCAAATCTGGAAGAGTTGGCACCGCTGGCGCCAGCGGGCCCCGCTGCCACGCCAGTCTGCGTGAAGCAAGAGCCTGTAGATACACCCACCCTCACGCTAGAGACTCTCGAGTCCAACCCCCAAAACATGAGAGGATCTATCATAGAGAGACATAATATGGCAGTTCTGAATGCCGCGCAAGAGCTTGATTCGGCGAGTTTCACTCCTCTGTTAATCAAAGACGAACTTTCATCGGAGGGAGAGTTCCAACAATTAAGCAGTGATGAGACAAGCGACGGCTGCCGCGAGTTGGAGCCGGCCACCCGCGGCAGCCCCAAAAGCTGGACGCAGCACGATATGGAACACGCGCTCGACGCACTGCGGAACCACCACATGAGTCTGACCAAGGCGTCAGCCACATATGGTATTCCATCAACAACGCTGTGGCAGCGTGCACACCGACTCGGCATCGACACGCCCAAGAAGGAAGGCAGCGCCAAGTCGTGGTCTGAAGCTGATTTGCGCGGGGCACTGCATGCGCTGAGAGCAGGGGCCATCTCCGCTAACAAGGCTAGCAAGGCTTATGGTATACCCAGCAGTACCCTGTACAAGATAGCCCGCCGCGAAGGGATTCGTCTTGCAGCTCCATTCAACGCGGCACCAGTGTCGTGGCGGCGCGGGGACTTGGCGCGCGCGCTGGCGGCCATCCGCGCGGGCGCCGCCTCCGTGCAGCGCGCTGCGGCGCAGTATGGGATACCCACTGGGACTCTTTATGGGCGATGTAAAAGAGAGGGCATAGAACTGTCTCGGTCTAATCCCACACCCTGGTCTGAGGATGCAATGGGAGAAGCTTTAGAAGCAGTCAGAGTGGGTCAAATGTCAATAAATCAAGCAGCCATTCACTATAATCTACCGTATTCATCACTTTATGGAAGATTCAAAAGATGCAAATATCTGGCTCAGGCCCAGCCAACGGCACAGCAAGAAATCCTCAATAATGTTGAAACAGCGGGCACTCAACAACAAGATGTATCTTACTACCATCCAACCCAGCAAATGCCTGAACCAGACCACATGACTGCAACCCAATATTCACATAACGACTTTATTCAACATACGTCGACGCACAATGATATCATAATACAAGACCCTTATGCCGGGCAAGCGATGTATTACAACCAAAACTTTAACGGCATCGTTACCAGTTGA
- Protein Sequence
- MPGNGSFQVKCEPPSDEEDNCPQLSDIFPNSKLPSEYHCTKVETVRRNDESPSANLLQHLQSTSNLEELAPLAPAGPAATPVCVKQEPVDTPTLTLETLESNPQNMRGSIIERHNMAVLNAAQELDSASFTPLLIKDELSSEGEFQQLSSDETSDGCRELEPATRGSPKSWTQHDMEHALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLAQAQPTAQQEILNNVETAGTQQQDVSYYHPTQQMPEPDHMTATQYSHNDFIQHTSTHNDIIIQDPYAGQAMYYNQNFNGIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033740;
- 90% Identity
- -
- 80% Identity
- -