Aleu013048.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421273.1:16694054-16699202[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.1e-11 5.8e-08 33.0 0.0 4 39 146 182 143 186 0.90 2 4 1.9e-11 1.4e-08 35.0 0.2 2 39 198 235 197 238 0.93 3 4 1.5e-15 1.1e-12 48.1 0.2 2 45 253 297 252 297 0.96 4 4 9.2e-18 6.6e-15 55.2 0.0 1 41 304 345 304 348 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGGACAATTTCAAGTGAAATGCGAGCCACCTTCTGACGATGAAGATAACTGTCCTCAACTGTCTGATATATTTCCTAATAATAAGtCGTCATCTAGCCTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGGCCCGCTGCGACGCCAGTCTGCGTGAAGCAAGAGCCGGTAGAAACCCCCGCCCTCACGCTTGAGACCCTTGAATCCAACCCCCATAGCACGGGAAGTTCGATACTGGAGAGACACAATATGGTGATGCTGAATTCTGTGGAAGAAATCGATTCTGCGAGTTTCACACCTTTGGTTATTAAAGATGAACCTTCATCGGAGGGAGAGTTTCAACAACTGAGCAGCGACGAGACAAGCGACGGGTACCGTGAGGTGGAGTTGGCGGTGCGTGGCAGTCCCAAGAGCTGGACGCAACGTGATATGGACCACGCACTCGACGCGCTTCGGAACCATCACATGAGTTTGACCAAGGCATCAGCTACATACGGCATACCATCTACGACGCTGTGGCAACGCGCTCACCGTCTCGGCATCGACACGCCCAAGAAAGAAGGCAGCGCCAAGTCATGGTCTGAAACTGACCTGCGCGGGGCGCTCCATGCGTTACGAGCTGGAGCCATCTCCGCTAACAAGGCTAGCAAGGCGTATGGTATACCAAGCAGTACCCTATACAAGATAGCTCGCCGCGAGGGTATCCGCCTCGCAGCTCCATTCAACGCAGCGCCAGTGTCGTGGCGGCGCGGTGACCTGGCCCGAGCGCTGGCTGCCATCCGCGCCGGAGCTGCTTCTGTACAACGTGCCGCTGCACAGTATGGGATACCCACAGGAACTCTTTATGGACGATGTAAAAGAGAGGGTATAGAACTGTCTCGGTCCAACCCCACGCCTTGGTCTGAGGATGCAATGGGAGAAGCTTTAGAAGCAGTCAGAGTGGGTCAAATGTCAATTAACCAAGCAGCTATTCACTATAACCTGCCTTACTCATCCCTCTACGGAAGATTCAAGAGATGCAAATATTTAGCTCATACCCAGCCAATGGCACAGCAAGATATCTCCAGCAACCCTGAACCAGCGGCCACTCAACAAGATGCATTCTATTACCATCAGTCTCCACATAGTATGTCTGAACCAGATCACAACATTGTTCAAAGCTACTCACAGAATGACTACATTCAGCATACATCGTCGCATAACAACGGGTTACTACAAGATCCGTACGCCGGACAACCAATGTATTATAACCCAAACTTTAATGGTATTACCACTAGCTGA
- Protein Sequence
- MPGNGQFQVKCEPPSDDEDNCPQLSDIFPNNKSSSSLEELAPLAPAGPAATPVCVKQEPVETPALTLETLESNPHSTGSSILERHNMVMLNSVEEIDSASFTPLVIKDEPSSEGEFQQLSSDETSDGYREVELAVRGSPKSWTQRDMDHALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSETDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLAHTQPMAQQDISSNPEPAATQQDAFYYHQSPHSMSEPDHNIVQSYSQNDYIQHTSSHNNGLLQDPYAGQPMYYNPNFNGITTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033740;
- 90% Identity
- -
- 80% Identity
- -