Hato021708.2
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023295.1:1147270-1152608[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 3.2e-08 34.4 0.0 4 39 175 211 172 215 0.90 2 4 6.5e-11 1.5e-08 35.4 0.2 1 39 226 264 226 267 0.94 3 4 3.5e-15 7.8e-13 49.1 0.2 2 45 282 326 281 326 0.96 4 4 4.1e-17 9.2e-15 55.3 0.1 1 41 333 374 333 377 0.94
Sequence Information
- Coding Sequence
- ATGCCTGGGAACGGCCCGTTTCAAGTGAAATGTGAACCTCCGTCCGACGAAGAAGATAACTGTCCGCAACTATCTGACATATTCCTTAACGATAAGCTCTCTTCAGATCAAAGCTATAATTGTACCAAAGTAGAGACAGCAGGCCAGCATGAAGAAAATGCTTCCACAACGGATATATTGCAACACTTGCAGTCGTCAGCAAATCTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGCCCTGCTGCGACGCCGGTCTGCGTCAAGCAAGAGCCGGTAGACACCCCCGCACTTACACTAGAAACACTTGAGTCCAATCCACATAGCACGGGAAATGCGATTCTGGAGCGTCATATGGCGATGCTCAGCTCAACAGAAGAACTCGATTCTTCTAGTTTCACTCCTCTTCTAATCAAAGACGAGCCTTCCTCAGAGGAGTTCCATCAAGCGAGCGGTGACGAGACGAGCGAGGGGTGCCGTGACGCGGAGCCAACGCGCGGCAGCCCCAAGAGCTGGACCCAGCGAGACATGGAGCTCGCACTCCATGCGCTGAGGAACCATCACATGAGCCTGACCAAGGCATCAGCCACATACGGTATTCCGTCAACGACGTTATGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAAGAAGGCAGCGCCAAGTCGTGGTCCGAGGAAGACTTGCGCGGCGCGCTGCAGGCGCTGCGTGCTGGAGCCATCTCGGCCAACAAGGCTAGCAAGGCTTACGGTATCCCGAGCAGTACGTTGTACAAGATTGCGCGGCGCGAGGGCATCCGGCTCGCAGCACCGTTTAACGCAGCCCCCGTGTCCTGGCGGCGCGGCGACCTCACGCGGGCCCTGGCGGCCATCCGGGCGGGCGCTGCCTCGGTGCAGCGAGCCGCCGCGCACTATGGGATACCCACCGGGACTCTCTACGGACGATGTAAAAGAGAGGGCATAGAACTGTCTCGGTCCAACCCCACGCCGTGGTCGGAGGATGCGATGGGAGAGGCTTTAGAAGCAGTCAGAGTCGGCCAAATGTCAATTAACCAAGCAGCGATCCACTACAACCTGCCATACTCCTCTCTTTATGGAAGGTTCAAACGATGCAAATATATCGCtcagGCCCAGCCAATGGGACAATCCAGCCAAGATACCCCAAGCAACCCAGAAATGGTGGCCACGCAGCAAGAGGCATATTACCAACAGACCCCGCACATGTCCGAACCAGACCACTCCATGACCCAGGCCTATCCTCCCAGCGACTACATCCAGCACACAACAACGCACGATGGGGTAATACAGGAGACGTACGGACAAGCGATGTATTACAACCAGTGTTTTAACGGCATCGCAACAAGCTGA
- Protein Sequence
- MPGNGPFQVKCEPPSDEEDNCPQLSDIFLNDKLSSDQSYNCTKVETAGQHEENASTTDILQHLQSSANLEELAPLAPAGPAATPVCVKQEPVDTPALTLETLESNPHSTGNAILERHMAMLSSTEELDSSSFTPLLIKDEPSSEEFHQASGDETSEGCRDAEPTRGSPKSWTQRDMELALHALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEEDLRGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLTRALAAIRAGAASVQRAAAHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYIAQAQPMGQSSQDTPSNPEMVATQQEAYYQQTPHMSEPDHSMTQAYPPSDYIQHTTTHDGVIQETYGQAMYYNQCFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033740;
- 90% Identity
- iTF_00826749;
- 80% Identity
- -