Celi003716.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026072.1:10709090-10714511[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-11 2.3e-08 34.2 0.0 1 39 171 210 171 214 0.89 2 4 2.2e-11 3.8e-08 33.5 0.3 2 39 226 263 225 266 0.92 3 4 6.5e-16 1.1e-12 48.0 0.2 2 45 281 325 280 325 0.96 4 4 1.8e-18 3.1e-15 56.2 0.1 1 43 332 375 332 377 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGGAACAGACCGTTTCAAGTGAAATGCGAGCCACCTTCCGAAGAGGAAGATAACTGTCCTCAATTATCTGATGTATTCCATAGTAACAAGCTTCCATCTGAACATCCGTATGTAAAGGTTGAAACAATCGGACAAAATGATGAAAGCGCGTCAACAAATTTGTTGCAGCATTTGCAGTCGACAAGTGGCCTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCCGCCGCGACGCCGGTCTGCGTGAAGCAGGAGCCAGTGGATACACCGGCCCTCACGCTCGAGACCCTTGAGTCCGCGCCACATAGCACGGGTTGTTCACTCCTCGAGAGACACATGGCAATGCTAAATTCAGCTGAAGAGCTTGATTCTGCGAATTTCCGACCTCTACTAATTAAAGATGAACCATCGTCTGAAGGAGAGTTACAACAGCTCAGCAGCGACGAGACGAGTGAGTCGTGCCGCGAGGCCGAGCCGGCCGCGCGCGGCAGCCCTAAGAGCTGGACCCCGCGCGACATGGACCACGCGCTGGACGCGCTCAGGAACCACAACATGAGCTTGACTAAGGCATCGGCAACATACGGAATTCCATCCACGACTCTCTGGCAGCGCGCGCACCGCCTTGGCATCGACACGCCGAAGAAAGAAGGCGCCGCCAAATCCTGGTCCGAGGCTGATTTGCGGGGAGCATTGCACGCACTGCGAGCCGGGGCTATTTCCGCCAACAAGGCCAGCAAAGCTTATGGCATACCAAGCAGCACCCTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGCGACCTGGCGCGCGCGCTGGCCGCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTACGGGATACCCACCGGGACTCTCTACGGGCGATGTAAACGGGAAGGTATAGAACTTTCTAGATCCAACCCTACTCCTTGGTCCGAAGACGCAATGGGAGAAGCTTTAGAAGCAGTTAGAGTAGGCCAAATGTCGATAAATCAAGCAGCTATTCACTACAACTTGCCTTATTCGTCCCTCTATGGACGGTTCAAGCGATGCAAATATAACTCTCAGGCCCATCCCCAGGAAATGCAACAGCAAGAAATGCCTAAGAATCACGAAATGGTAATTAACCAACATCAAGAAATCTCCTACTACCATCAAATGCCACACATGCATCCTGGGCCAGACCACACCATCGTTCAAAACCACTACACTCAGAACGACTATGTTCAGAATACATCGGCGCAGAACAACATCATGATACAAGACCCATACGCAGGACCAGCGATGTATTACAACCAGAGCTTTAATAGCATCGCTACTAGCTGA
- Protein Sequence
- MPGNRPFQVKCEPPSEEEDNCPQLSDVFHSNKLPSEHPYVKVETIGQNDESASTNLLQHLQSTSGLEELAPLAPAGPAATPVCVKQEPVDTPALTLETLESAPHSTGCSLLERHMAMLNSAEELDSANFRPLLIKDEPSSEGELQQLSSDETSESCREAEPAARGSPKSWTPRDMDHALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYNSQAHPQEMQQQEMPKNHEMVINQHQEISYYHQMPHMHPGPDHTIVQNHYTQNDYVQNTSAQNNIMIQDPYAGPAMYYNQSFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033740;
- 90% Identity
- -
- 80% Identity
- -