Pchl015425.2
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621201.1:17011987-17017479[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 6.4e-08 33.0 0.0 4 39 173 209 170 213 0.89 2 4 8.5e-11 4.3e-08 33.6 0.3 2 39 225 262 224 265 0.92 3 4 2.5e-15 1.3e-12 48.0 0.2 2 45 280 324 279 324 0.96 4 4 1.4e-17 7e-15 55.3 0.0 1 41 331 372 331 375 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGGACCGTTTCAAGTGAAATGCGAGCCAACTTCAGACGAGGAAGATAGCAACCCGCAATTATGTGATATATTTCTAGGTACCGAGCTTCCCTTGGAATATCATTGCCTAAAGATAGAGACGATCGGACAAAATGAAGAAAGTACGTCATCGGATATTATACTGCAGCATTTGCAGGCATCGAGTGGTCTGGAAGAGCTAGCGCCGGCCGGGCCCGCCGCGACGCCGGTTTGCGTGAAGCAGGAGCCCGTGGACACGCCCGCGCTCACGCTAGAGACGCTGGAGTCAGCCCCGAATAGCACgGGCTGTTCATTATTAGAGAGACACATGGCGATGCTAAATTCGACTGAAGAGCTGGATTCTGCGAATTTCACACCTCTTAATATAATCAAGGATGAGCCTTCATCGGAAGGAGAGCTACAACACCTGAGCAGCGATGAAACGAGCGATTCCTTCCGTGACATCGAGCCAGCCGCACGAGGGAGTCCTAAGAGCTGGACACAGCAAGACATGGACAGTGCGCTGGATGCGTTACGGAACCACCACATGAGCTTAACCAAGGCCTCAGCAACGTACGGCATACCGTCCACAACGCTCTGGCAACGCGCACACCGGCTCGGCATCGACACGCCGAAGAAGGAAGGCAGTGCCAAGTCCTGGTCCGAAGCCGACCTGCGCGGGGCATTGCACGCACTACGAGCCGGGGCCATCTCCGCTAACAAGGCCAGCAAGGCTTATGGGATACCGAGCAGCACCCTGTACAAAATAGCTCGGCGCGAGGGCATCCGGCTGGCGGCGCCTTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGGGACCTggcgcgcgcgctcgccgccatccgcgccggcgccgcctccgTGCAGCGCGCCGCCGCTCAGTACGGGATACCCACCGGAACATTGTACGGGCGATGTAAACGGGAAGGCATCGAACTGTCTCGCTCTAACCCCACACCTTGGTCTGAGGACGCGATGGGAGAAGCTTTAGAAGCAGTCAGAGTGGGTCAAATGTCAATAAACCAAGCTGCAATCCACTACAACCTGCCTTACTCTTCACTCTATGGGAGGTTTAAGAGATGCAAATATCTAGCACAGGCGCAGCAATTGTCGCAACAAGAAACGACCAAAAACCACGATATGGCGCCCAACCAACCAGACTTATCCTATTATCACCAGATGCCCATGCAAGCGCCAGACCACTCCATCGTCCAAAACTATACGCAGAACGAGTATGTTCCACATCCATCGACGCATAACAACGCGATGCTGCAAGATCCCTACGCAGGACAAACGATGTATTACAACCAGAGTTTTAGCAGCATCGCTACCAGCTGA
- Protein Sequence
- MPGNGPFQVKCEPTSDEEDSNPQLCDIFLGTELPLEYHCLKIETIGQNEESTSSDIILQHLQASSGLEELAPAGPAATPVCVKQEPVDTPALTLETLESAPNSTGCSLLERHMAMLNSTEELDSANFTPLNIIKDEPSSEGELQHLSSDETSDSFRDIEPAARGSPKSWTQQDMDSALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLAQAQQLSQQETTKNHDMAPNQPDLSYYHQMPMQAPDHSIVQNYTQNEYVPHPSTHNNAMLQDPYAGQTMYYNQSFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033740;
- 90% Identity
- -
- 80% Identity
- -