Znev000611.1
Basic Information
- Insect
- Zootermopsis nevadensis
- Gene Symbol
- -
- Assembly
- GCA_000696155.1
- Location
- NW:123997-140368[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.5e-13 1.9e-09 36.4 0.0 1 38 158 196 158 201 0.90 2 4 4.9e-14 1.1e-10 40.4 0.1 1 39 212 250 212 253 0.95 3 4 6e-19 1.4e-15 56.1 0.0 1 45 267 312 267 312 0.97 4 4 1.8e-20 4.1e-17 61.0 0.1 1 43 319 362 319 363 0.97
Sequence Information
- Coding Sequence
- ATGGCGCCCCATGGGGGGCTTGCGCAGCCGCCACAGATCGTAATGGAAGGGACAAGCCACAGTTCTAGCAACACAACAGATGTGGACATCCCCCCTGAGGCCCAGCCCCCCGCTCCGGCAGCCACACTAGTCAAAGACATGGACATGAATGAGTGCTCGGCCCACGACAGGGACAGGGGTTTGACAGATACTTCAGAAGGTACTAGAGATgaggaaaatgttaaagttaAGTTTGAGACATTGAGAGCAATGGAACAGGCAGAAACAATTGATATTGACAGTCACATGTCTGATAGGAGTCCTACCTACCAGAACCTTAATGGTGCTGCTCTATTGCAGCAAAGTGTGGGTGAAGATGAACATACAATGCATACTATGATGATCACACCAGAGCTCCTGGGCCTTAtcccatcatcatcagggcattcaGATGTGAGTAGTGATGCTGGGAAAGGTGGACCAAAGACGTGGACTCAAGAAGACATGGAGCTAGCTCTGGATGCTCTACGGAACCACAATATGAGCTTAACTAAGGCATCGGCAACGTACGGTATTCCATCCACCACGCTGTGGCAGCGAGCCCATCGTATGGGCATAGACACGCCTAAGAAGGAAGGCCCCACAAAATCGTGGACAGAAGAAAATCTTAATAATGCACTGGAAGCATTAAGAACTGGAACAATCTCAGCCAACAAAGCTAGTAAAGCATATGGTATACCAAGTAGCACCCTGTACAAGATAGCTCGACGCGAGGGAATCCGTTTAGCTGCGCCATTCAATGCAGCACCTACCACCTGGAGTCCAGATGATCTTGAACGAGCTTTAGAATCCATCCGTTCTGGCGCTACATCAGTCCAGAGAGCATCAACAGAGTTTGGTATCCCGACTGGAACGTTATATGGCCGTTGCAAGAGGGAAGGCATCGAGTTATCGCGTTCAAATCCGACACCGTGGTCAGAAGATGCCATGGGCGAGGCCCTAGAAGCCGTTCGTGTTGGACAGATGAGTATCAACCAAGCAGCCATCCATTACAATTTACCTTACTCATCTTTGTACGGTCGGTTCAAGAGAGGTAAGTACGAAGCCGAAGGACACCATCCAGATGACGGGCCGTCGCCGCCGCCGCCGCCTCCTCCTCAAGTGATGGTAGTACCATACCAGCAACCACCTCAACAGCAACCACCCCAACACAATCAACACCTTCCTCAACAACCACCACAACATCACTCACCCCAGCAGCAACAGCATCCCATGTACCAGCAACATAGCAACAGTTGA
- Protein Sequence
- MAPHGGLAQPPQIVMEGTSHSSSNTTDVDIPPEAQPPAPAATLVKDMDMNECSAHDRDRGLTDTSEGTRDEENVKVKFETLRAMEQAETIDIDSHMSDRSPTYQNLNGAALLQQSVGEDEHTMHTMMITPELLGLIPSSSGHSDVSSDAGKGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGATSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHHPDDGPSPPPPPPPQVMVVPYQQPPQQQPPQHNQHLPQQPPQHHSPQQQQHPMYQQHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370147; iTF_00955491; iTF_00434729; iTF_01410675; iTF_01448369; iTF_00820850; iTF_00995127; iTF_01288887;
- 90% Identity
- iTF_00820850;
- 80% Identity
- -