Rluc010464.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- -
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010000735.1:65327-75792[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.5e-12 6.1e-09 36.2 0.0 1 38 229 267 229 272 0.90 2 4 2.6e-13 3.5e-10 40.1 0.1 1 39 283 321 283 324 0.95 3 4 3.2e-18 4.3e-15 55.8 0.0 1 45 338 383 338 383 0.97 4 4 9.7e-20 1.3e-16 60.7 0.1 1 43 390 433 390 434 0.97
Sequence Information
- Coding Sequence
- ATGGCTTTACATTACTGTGCCAGCATATGCACATACCAAAGCCTGTATCAGCAGGCCCAAATAGCTCATCACTATCAACGGTTGAGTACCAACATTCTGGTGAACAAATGGCTTGATAAGTGGAGGGGAAAACATAACCACTCAGGGGAGCTTGTGTTGGTGTTATGTGTTTCATGGCAGTTGGGGAATGGGGCTGTGCCGACAGCGGGGGTGATGGCGCCCAATGGGGGGCTTTCACAATCGCCACAGATCGTAATGGAAGGGACAAGCCACAGTTCTAGCAACGCAACGGATGTCGACATCCCCCCTGAGGCCCAGCCCCCCGCTCCGGCAGCCACACTAGTCAAAGACATGGACATGAGTGAGTGCTCATCCCATGACAGGAACAGAGATTTAACAGATACTTCAGAAGGTGCTAGAGATGAGGAAAATGTGAAAGTTAAGTTTGAAACACTCCGAGCGATGGAACAAGCAGAAACTATTGATATTGATAGCCATATGTCTGATAGGAGTCCTACATACCAGAACCTTAATGGTGCTGCTGTATTGCAGTCAAGTGTGGGTGAGGATGAACACACCATGCATACCATGATGATCACGCCAGAGCTGCTGGGGCTTATACCATCGTCTTCAGGGCATTCAGATGTGGGTAGTGACGCTGGGAAAGGTGGGCCAAAGACATGGACTCAGGAGGATATGGAACTAGCTCTGGATGCACTGCGGAACCACAATATGAGTTTAACTAAGGCATCTGCAACATATGGTATTCCTTCTACCACATTGTGGCAGCGAGCCCATCGTATGGGCATTGACACGCCAAAAAAGGAAGGCCCCACAAAATCCTGGACAGAAGAAAATCTTAATAATGCGCTGGAAGCATTACGAACTGGAACAATCTCTGCCAACAAAGCTAGCAAAGCATACGGTATACCAAGTAGCACCCTGTACAAGATAGCACGGCGTGAGGGAATTCGTTTAGCTGCACCGTTCAATGCAGCACCTACCACCTGGAGTCCAGACGATCTGGAACGAGCTTTAGAATCCATCCGTTCTGGTGCTACATCAGTCCAGAGAGCATCGACGGAGTTTGGTATCCCAACTGGAACATTATATGGCCGTTGCAAGAGAGAAGGCATAGAATTATCACGCTCAAATCCAACTCCTTGGTCAGAAGATGCCATGGGCGAGGCCCTAGAGGCTGTTCGTGTTGGACAAATGAGTATCAACCAAGCAGCCATCCATTATAATTTACCTTATTCATCTTTGTATGGTCGTTTCAAGAGAGGTAAATACGAAGCAGAAGGACACCATCCGGATGACGGGCCTTCACCGCCACCGCCTCAGGTGATGGTGGTACCATACCAGCAGCCGCCTCAGCAACCACAACCTCCCCCACACAATCAGCACCTCCCTCCACAACCTTCACAACATCATTCTCCTCAGCAGCAACACCCGATGTACCAGCAACACAGCAACAGTTGA
- Protein Sequence
- MALHYCASICTYQSLYQQAQIAHHYQRLSTNILVNKWLDKWRGKHNHSGELVLVLCVSWQLGNGAVPTAGVMAPNGGLSQSPQIVMEGTSHSSSNATDVDIPPEAQPPAPAATLVKDMDMSECSSHDRNRDLTDTSEGARDEENVKVKFETLRAMEQAETIDIDSHMSDRSPTYQNLNGAAVLQSSVGEDEHTMHTMMITPELLGLIPSSSGHSDVGSDAGKGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGATSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHHPDDGPSPPPPQVMVVPYQQPPQQPQPPPHNQHLPPQPSQHHSPQQQHPMYQQHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566890;
- 90% Identity
- iTF_00820850;
- 80% Identity
- -