Mvio017569.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- -
- Assembly
- GCA_030762175.1
- Location
- CM060834.1:59428339-59459192[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.2e-12 1.1e-08 36.4 0.0 1 38 159 197 159 202 0.90 2 4 1.9e-13 6.4e-10 40.4 0.1 1 39 213 251 213 254 0.95 3 4 2.3e-18 7.8e-15 56.1 0.0 1 45 268 313 268 313 0.97 4 4 7.3e-19 2.5e-15 57.7 0.1 1 43 320 363 320 364 0.96
Sequence Information
- Coding Sequence
- ATGGCGCCCAATGGGGGTCTCTCACAGCAACCACAGATAGTCATGGAAGGAACAAGTCACAGTTCCAGCAACGCCACTGAAGTGGACATTCCCCCAGAGGCCCAGCCCCCCGCTCCGGCAGCCACACTAGTCGAAGATATGGACATGAACGAATGCTCCACGCATGACCGTAACAGGGATTTGACAGACACCTCAGATACAGTGCGTGATGGTGAAAAtgttaaagtgaaatttgaaactttaagGGCTATGGAGCAAGGTGATACAATTGATATTGACAGCCATATGTCGGATAGgAGTCCTACCTACCACAACCTTAATGGTGCTGCTCTATTGCAGCAAAATGTGAGCGGCGAGGATGAACATACTATGCACACAATGATGATCACACCTGAATTACTGGGTCTTATTCCATCCTCATCAGGTCACTCAGATGTCAGCAGTGATGCAGGTAAAGGTGGTCCCAAAACTTGGACACAAGAAGATATGGAGCTTGCATTGGATGCTCTACGAAACCACAATATGAGTTTAACAAAGGCTTCAGCAACTTATGGTATTCCTTCCACCACTCTCTGGCAAAGAGCTCATCGTATGGGCATTGACACTCCCAAAAAGGAGGGTCCAACAAAATCTTGGACTGAAGAAAATCTCAACAATGCTTTGGAAGCTCTTCGCACAGGCACTATTTCAGCAAACAAAGCTAGCAAAGCATACGGTATCCCAAGTAGTACATTGTACAAAATTGCTCGTCGAGAAGGAATTCGGTTAGCAGCACCATTTAATGCAGCCCCCACTACTTGGAGTCCTGATGACTTGGAACGAGCTTTGGAATCCATTCGTTCAGGTGCAACCTCAGTTCAAAGAGCATCAACAGAATTTGGCATACCAACTGGCACCTTATATGGTCGATGTAAAAGAGAAGGCATTGAGTTGTCAAGGTCAAATCCTACACCATGGTCTGAGGATGCAATGGGAGATGCCTTAGAAGCTGTTCGTGTTGGTCAAATGAGCATCAACCAAGCAGCAATTCATTATAACTTACCTTATTCGTCATTGTATGGTAGGTTTAAGAGAGGGAAGTATGAGGCTGAAGGTCACCATCCTGAAGAAACAGGTGCCTCACCCCCTCCACCCCAAGTGATGGTAGTCCCTTACCAACAACCTCCCCCACAGCAACAGCAAACCCAGCAGCATAATCAACACCATCCACAACAGCCACCCCAACACCACTCTCCACAGCAACATCCCATGTACCAGCAGCATCCGCAGCATAGCAACAGTTGA
- Protein Sequence
- MAPNGGLSQQPQIVMEGTSHSSSNATEVDIPPEAQPPAPAATLVEDMDMNECSTHDRNRDLTDTSDTVRDGENVKVKFETLRAMEQGDTIDIDSHMSDRSPTYHNLNGAALLQQNVSGEDEHTMHTMMITPELLGLIPSSSGHSDVSSDAGKGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGATSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGDALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHHPEETGASPPPPQVMVVPYQQPPPQQQQTQQHNQHHPQQPPQHHSPQQHPMYQQHPQHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566890;
- 90% Identity
- iTF_00820850;
- 80% Identity
- -