Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.9e-11 1e-08 36.8 0.0 1 38 95 133 95 138 0.90

2 4 6e-13 3.3e-10 41.6 0.1 1 39 149 187 149 190 0.95

3 4 4.1e-18 2.3e-15 58.1 0.0 1 45 204 249 204 249 0.97

4 4 4e-19 2.2e-16 61.4 0.1 1 43 256 299 256 300 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.9e-11	1e-08	36.8	0.0	1	38	95	133	95	138	0.90
2	4	6e-13	3.3e-10	41.6	0.1	1	39	149	187	149	190	0.95
3	4	4.1e-18	2.3e-15	58.1	0.0	1	45	204	249	204	249	0.97
4	4	4e-19	2.2e-16	61.4	0.1	1	43	256	299	256	300	0.97

Coding Sequence: ATGTTAACATCAGATGCAGATGGTTCTAGTGTGTCTCAGCGAGAAACTGAAGATGTTAAAGTTAAGTTTGAAACCCTACGTGCCATGGAACAGGCGGAAACTATTGACATAAACAGCCACTTGTCCGACAGAGTAAGTGACCATAATGTAGGTGAGGATGAACATACAATGCACACAATGATGATCACACCAGAACTACTTGGGTTAATTCCTTCATCGTCGGGACAATCGGATGTGAGTAGCGACGCAGGCAAATGTGGCGTTATGGGCCCCAAGACGTGGACACAGGAGGATATGGAACTTGCCTTGGATGCACTGAGAAACCACAACATGAGTCTTACTAAGGCATCTGCAACTTATGGCATTCCTTCCACGACTTTGTGGCAACGAGCTCATCGCATGGGAATTGACACCCCCAAAAAGGAGGGTCCCACTAAGTCTTGGACAGAGGAAAACCTCAATAGTGCACTGGAGGCACTCAGAACTGGCTCTATATCTGCTAACAAAGCCAGCAAAGCTTATGGTATACCCAGCAGTACCCTGTACAAAATTGCTCGTCGTGAAGGAATACGTTTGGCTGCTCCATTTAATGCTGCGCCTACAACTTGGACTCAAGATGACCTTGAACGAGCTCTAGAAGCTATTCGTTCAGGACAAACATCTGTTCAACGTGCCTCTACAGAATTTGGGATTCCTACAGGGACATTATACGGCCGTTGCAAACGAGAAGGTATTGAACTTTCTAGGAGTAATCCTACACCATGGTCAGAAGATGCAATGGGTGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAACCAAGCGGCAATTCACTACAATCTTCCGTATTCTTCCTTGTATGGCAGATTTAAAAGGGGCAAGTACGAGGCGGAGGGGCACCAGCATCCGGATGAAACGGGCCACCACTCTCCCCCGACATCGGCACCACAGCAGCaaccccctccacccccacaACACCACTCCCCTCAACAACATCCTATGTACCAGCAGCATGCCCCTCACAGCGCGAGTTGA
Protein Sequence: MLTSDADGSSVSQRETEDVKVKFETLRAMEQAETIDINSHLSDRVSDHNVGEDEHTMHTMMITPELLGLIPSSSGQSDVSSDAGKCGVMGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNSALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHQHPDETGHHSPPTSAPQQQPPPPPQHHSPQQHPMYQQHAPHSAS*

Sequence clustering based on sequence similarity using MMseqs2