Cfor010806.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- -
- Assembly
- GCA_013340265.1
- Location
- BLKM01000241.1:972386-982616[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-12 2.1e-09 36.4 0.0 1 38 157 195 157 200 0.90 2 4 9.8e-14 1.2e-10 40.4 0.1 1 39 211 249 211 252 0.95 3 4 1.2e-18 1.5e-15 56.1 0.0 1 45 266 311 266 311 0.97 4 4 3.6e-20 4.5e-17 61.0 0.1 1 43 318 361 318 362 0.97
Sequence Information
- Coding Sequence
- ATGGCGCCCAATGGGGGGCTTTCACAACCGCCACAGATCGTAATGGAAGGGACAAGCCACAGTTCTAGCAACACAACGGACGTCGACATCCCCCCTGAGGCCCAGCCCCCCGCTCCGGCAGCCACACTAGTCAAAGACATGGACATGAACGAGTGCTCATCACATGACAGAAACAGAGATTTAACAGATACTTCAGAAGGTGCTAGAGATGAGGAAAATGTGAAAGTTAAGTTTGAAACACTGCGAGCGATGGAACAAGCAGAAACTATTGATATTGATAGCCATATGTCTGATAGGAGTCCTACGTACCAGAACCTTAATGGTGCTGTATTGCAACCAAGTGTGAGTGAGGATGAACACACCATGCATACTATGATGATCACACCAGAGCTGCTGGGGCTTATACCATCATCGTCAGGGCATTCAGATGTGAGTAGTGACGCTGGGAAAGGTGGGCCAAAGACGTGGACTCAGGAGGATATGGAACTAGCTCTGGATGCACTGCGGAACCACAATATGAGTTTAACTAAGGCGTCTGCAACATATGGTATTCCTTCCACCACATTGTGGCAGCGAGCCCATCGTATGGGCATTGACACGCCAAAAAAGGAAGGCCCCACAAAATCCTGGACAGAGGAAAATCTTAATAATGCGCTGGAAGCGTTACGAACTGGAACAATCTCTGCTAACAAGGCTAGCAAAGCATACGGTATACCAAGTAGCACCCTGTACAAGATAGCACGCCGTGAGGGAATTCGTTTAGCTGCACCGTTCAATGCAGCACCAACCACCTGGAGCCCAGATGACCTGGAACGAGCTTTAGAGTCCATCCGTTCTGGTGCTACATCAGTCCAGAGAGCATCGACAGAGTTTGGTATCCCAACTGGAACGCTATATGGCCGTTGCAAGAGAGAAGGCATAGAATTGTCACGTTCAAATCCAACTCCGTGGTCAGAAGATGCCATGGGTGAGGCCCTAGAGGCCGTTCGTGTTGGACAAATGAGTATTAACCAAGCAGCCATCCATTATAATTTACCTTATTCATCTTTGTATGGTCGGTTCAAGAGAGGTAAATACGAAGCTGAAGGACACCATCCAGATGATGGGCCttcaccgccgccaccaccaccgcctcAGGTGATGGTGGTACCATACCAGCAGCCACCTCAGCAACCACAACCTCCCCCACACAATCAGCACCTCCCTCCACAACCTCCACAACATCATTCTCctcaacaacaacagcagcagcacccAATGTACCAGCAGCACAGCAACAGTTGA
- Protein Sequence
- MAPNGGLSQPPQIVMEGTSHSSSNTTDVDIPPEAQPPAPAATLVKDMDMNECSSHDRNRDLTDTSEGARDEENVKVKFETLRAMEQAETIDIDSHMSDRSPTYQNLNGAVLQPSVSEDEHTMHTMMITPELLGLIPSSSGHSDVSSDAGKGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGATSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHHPDDGPSPPPPPPPQVMVVPYQQPPQQPQPPPHNQHLPPQPPQHHSPQQQQQQHPMYQQHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566890;
- 90% Identity
- iTF_00820850;
- 80% Identity
- -