Tsin046854.1
Basic Information
- Insect
- Tenodera sinensis
- Gene Symbol
- -
- Assembly
- GCA_030765045.1
- Location
- CM060965.1:158153640-158168993[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.9e-12 1.5e-08 36.5 0.0 1 38 145 183 145 188 0.90 2 4 5.1e-13 8.6e-10 40.5 0.1 1 39 199 237 199 240 0.95 3 4 6.3e-18 1e-14 56.2 0.0 1 45 254 299 254 299 0.97 4 4 1.9e-19 3.2e-16 61.0 0.1 1 43 306 349 306 350 0.97
Sequence Information
- Coding Sequence
- ATGGCGCCCAATGGGGGTCTCTCGCAGCAACCTCAGATAGTCATGGAAGGAACGAGTCACAGTTCCAGCACTGCCACCGAAGTGGATATTCCCCCAGAGGCCCAGCCCCCCGCTCCGGCAGCCACACTAGTCGAAGACATGGACATGAACGAATGCTCCACACATGATCGCAACAGAGAATTGACAGATACTTCCGATACAGTGCGTGACGATGAAAATGTAAAAGTGAAATTTGAGACTTTGAGGGCAATGGAGCAAGGGGATACAATTGATATTGACAGTCACATGTCAGATAGGCAAAATGTGAGCGGTGAGGATGAACATACTATGCACACAATGATGATCACACCCGAATTACTGGGTCTTATTCCATCTTCTTCAGGTCATTCAGATGTTAGCAGTGACGCGGGTAAAGGAGGTCCAAAAACATGGACGCAAGAAGATATGGAACTTGCGTTGGATGCTCTCCGAAACCACAATATGAGTTTAACAAAGGCCTCTGCAACTTATGGTATTCCTTCCACCACTCTCTGGCAAAGAGCTCATCGTATGGGCATAGATACACCCAAAAAGGAGGGTCCAACAAAATCgtggactgaggaaaaccttaaTAATGCCTTGGAAGCTCTTCGCACAGGAACAATTTCAGCAAACAAGGCTAGCAAAGCATACGGCATACCAAGCAGTACGTTATACAAGATAGCCCGCCGAGAGGGCATCAGATTGGCAGCACCGTTCAATGCTGCTCCTACTACATGGAGTCCGGATGACTTGGAACGAGCTTTGGAGTCCATTCGTTCAGGTGCAACCTCGGTTCAAAGAGCATCAACGGAATTTGGTATACCAACTGGCACATTGTATGGAAGGTGCAAGAGAGAAGGCATTGAGTTATCGAGATCAAATCCTACACCATGGTCTGAAGATGCTATGGGTGAAGCCTTGGAAGCTGTTCGTGTTGGTCAAATGAGTATCAACCAAGCAGCAATTCATTACAATTTACCTTACTCTTCATTATATGGTAGGTTTAAGAGAGGGAAATATGAGGCTGAGGGTCACCATCCAGAAGAAACAGGTGCCTCACCCCCTCCACCTCAAGTGATGGTAGTTCCTTACCAGCAACCTCCACCACAACAGCAACCTCAGCAACATAACCAACACCATCCGCAACAGCCTCCCCAACACCACTCGCCACAGCAACATCCCATGTACCAACAACATCCACAGCACAGTAACAGTTGA
- Protein Sequence
- MAPNGGLSQQPQIVMEGTSHSSSTATEVDIPPEAQPPAPAATLVEDMDMNECSTHDRNRELTDTSDTVRDDENVKVKFETLRAMEQGDTIDIDSHMSDRQNVSGEDEHTMHTMMITPELLGLIPSSSGHSDVSSDAGKGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGATSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHHPEETGASPPPPQVMVVPYQQPPPQQQPQQHNQHHPQQPPQHHSPQQHPMYQQHPQHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566890;
- 90% Identity
- iTF_00820850;
- 80% Identity
- -