Hcor019391.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- -
- Assembly
- GCA_030762935.1
- Location
- CM060884.1:41208908-41228232[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.3e-12 2.1e-08 36.4 0.0 1 38 159 197 159 202 0.90 2 4 5.4e-13 1.2e-09 40.4 0.1 1 39 213 251 213 254 0.95 3 4 6.6e-18 1.5e-14 56.1 0.0 1 45 268 313 268 313 0.97 4 4 2e-19 4.5e-16 61.0 0.1 1 43 320 363 320 364 0.97
Sequence Information
- Coding Sequence
- ATGGCGCCCAATGGGGGTCTCTCGCAGCAACCTCAGATAGTCATGGAAGGAACGAGTCACAGTTCCAGCACCGCCACCGAAGTGGACATTCCCCCAGAGGCCCAGCCCCCCGCTCCGGCAGCCACACTAGTCGAAGACATGGACATGAATGAATGCTCCACACATGATCGCAACAGAGATTTGACAGATACTTCTGACACTGTGCGTGATGGCGAGAATGTAAAAGTGAAATTTGAGACTTTGAGGGCTATGGAGCAAGGGGATACAATTGACATTGACAGTCACATGTCAGATAGGAGTCCTACCTACCACAACCTTAATGGTGCTGCTCTATTGCAGCAAAATGTGAGCGGAGAGGATGAACATACTATGCACACAATGATGATCACACCCGAATTACTGGGTCTTATTCCATCTTCTTCAGGTCATTCAGACGTTAGCAGTGATGCAGGTAAAGGAGGTCCAAAAACATGGACACAAGAAGATATGGAACTTGCATTGGATGCTCTTCGAAATCACAACATGAGCTTAACAAAGGCCTCAGCAACTTACGGTATTCCTTCCACTACTCTCTGGCAAAGAGCTCATCGTATGGGCATAGATACACCCAAAAAGGAGGGTCCAACAAAATCTTGGACTGAGGAAAACCTTAATAATGCCTTGGAAGCTCTGCGCACAGGAACAATTTCAGCAAATAAGGCTAGCAAAGCATATGGTATACCAAGCAGTACATTATACAAAATAGCCCGCCGAGAGGGTATCAGATTGGCAGCACCGTTCAATGCTGCCCCTACAACATGGAGTCCAGATGACTTGGAAAGAGCTTTGGAGTCCATTCGTTCAGGTGCAACTTCAGTTCAAAGAGCATCAACGGAATTTGGTATACCAACTGGCACGTTATATGGTAGGTGCAAAAGAGAAGGCATCGAGTTATCTAGATCAAATCCTACACCATGGTCTGAAGATGCTATGGGTGAAGCGTTAGAAGCTGTTCGTGTTGGTCAGATGAGCATCAACCAAGCAGCAATTCATTACAATTTACCTTACTCTTCATTATACGGTAGGTTTAAGAGAGGGAAATACGAGGCTGAAGGTCATCATCCAGAAGAAACAGGTGCCTCACCCCCTCCACCTCAAGTGATGGTAGTTCCTTACCAACAACCtccaccaccacaacaacaaccTCAACAGCATAACCAACACCATCCACAACAGCCTCCCCAACACCACTCGCCACAGCAACATCCCATGTACCAACATCCACAGCACAGTAACAGTTGA
- Protein Sequence
- MAPNGGLSQQPQIVMEGTSHSSSTATEVDIPPEAQPPAPAATLVEDMDMNECSTHDRNRDLTDTSDTVRDGENVKVKFETLRAMEQGDTIDIDSHMSDRSPTYHNLNGAALLQQNVSGEDEHTMHTMMITPELLGLIPSSSGHSDVSSDAGKGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGATSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHHPEETGASPPPPQVMVVPYQQPPPPQQQPQQHNQHHPQQPPQHHSPQQHPMYQHPQHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566890;
- 90% Identity
- iTF_00995127; iTF_01566890; iTF_00370147; iTF_01410675; iTF_00955491; iTF_00434729; iTF_01288887;
- 80% Identity
- -