Xseg003856.1
Basic Information
- Insect
- Xylota segnis
- Gene Symbol
- MBD2
- Assembly
- GCA_963583995.1
- Location
- OY757236.1:113970417-113971735[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-25 5.2e-22 77.3 0.0 1 74 7 75 7 78 0.95 2 2 9.9e-06 0.035 13.7 0.0 26 74 161 218 142 221 0.87
Sequence Information
- Coding Sequence
- ATGAATCCCAGTTTCACTATCGAACGTAAACGCGTTGATTGTAATTCCCTTCCAAAAGGATGGCAACGAGAAGAAGTACTCCGAAAGTCTGGCCTCTCTGCGGGGAAAGTTGATGTTTACTACTACAGTCCCAGTGGTAAGAAATTTGATAGTAAGCCCCAACTAGCACGTCAACTAGGCGACACAATTGATATATCGGCGTTTGACTTTCAATCGGGTAAGACTATACAAAATCTACCACCGCCGTCGATCTCATTGAATCGCTGTAGCGGGTCATCGTCGAGCTCGCTCAAGCGCAAATACAAACCCCAAGTCACAGCAACGACAACAGCGACGCCATCGACAACGCCACCATCTTCGTCTGCCGGCGGATTTGGTGGAGTACCACCACCCTCTAGTTCCTCCCATAGCATCTCAGCATCAAGTAGTAGTGGTAGTTCCTCACTTCCATCGTCGACTTTAAGACAACATCTTGAGTTCAGTCGCGCTATTCGCACAGATGTCTCATTGGTGCCGCCCATTCGACAGACTGCATCCATTTTCAAGCAACCAGTGACGGTGGTTCGCAATCACGAGAACACGAAAGTGAAGCATGACCTGAAGAATGGCAACCAAGAGAAACCGAAACAGCTTTTCTGGGAGAAACGCTTGGAGGGACTCCGTGCGTGCAATATTACCGGCGAAGAGTTTGACAACATAGAGCTGCCACGTGGAATAAGATCGGTCGGACCGAATGTTGACGAACAAACAGTGTTGCAGTCGGTAGCCACTGCCTTGCATGTGCAAAATCAACCCGTAACTGGACAGACCTCATCAAAGACAGAGCTGACGAAAAATTCTGGTGCATTCCTGAATCCCGACCAGCCGCTAATGCAATCGGTTGTTATATCAGAGGACGACATCCGTCGCCAGGAGGACCGTGTGAATGTAGCTAGACGAAAACTTCAAGACGCCCTGAAGTCTTAA
- Protein Sequence
- MNPSFTIERKRVDCNSLPKGWQREEVLRKSGLSAGKVDVYYYSPSGKKFDSKPQLARQLGDTIDISAFDFQSGKTIQNLPPPSISLNRCSGSSSSSLKRKYKPQVTATTTATPSTTPPSSSAGGFGGVPPPSSSSHSISASSSSGSSSLPSSTLRQHLEFSRAIRTDVSLVPPIRQTASIFKQPVTVVRNHENTKVKHDLKNGNQEKPKQLFWEKRLEGLRACNITGEEFDNIELPRGIRSVGPNVDEQTVLQSVATALHVQNQPVTGQTSSKTELTKNSGAFLNPDQPLMQSVVISEDDIRRQEDRVNVARRKLQDALKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694636;
- 90% Identity
- iTF_00312610; iTF_00313475; iTF_00314307; iTF_00315971; iTF_00311053; iTF_00315182; iTF_00671587; iTF_01253891; iTF_00311816; iTF_00240753; iTF_00724792; iTF_00670942; iTF_01044711; iTF_00310251; iTF_00672212; iTF_01223427; iTF_00672843; iTF_01395837; iTF_00991807; iTF_00688668; iTF_00976480; iTF_01300032; iTF_01300890; iTF_00389621; iTF_01116456; iTF_01521887; iTF_01521088; iTF_01522665; iTF_01542211;
- 80% Identity
- -