Spip018464.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- MBD2
- Assembly
- GCA_905187475.1
- Location
- LR994572.1:68540326-68541722[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-25 1.1e-21 76.3 0.0 1 71 7 72 7 93 0.89 2 2 8.7e-07 0.0034 17.1 0.0 26 74 161 218 142 221 0.88
Sequence Information
- Coding Sequence
- ATGAATCCCAACATAACTATCGAACGTAAACGCGTCGACTGTAATTCCCTTCCAAAAGGATGGCAACGAGAAGAAGTCCTCCGAAAGTCCGGCATTTCTGCAGGGAAAGTTGATGTTTACTACTACAGTCCCACTGGTAAGAAATTTGATAGTAAACCCCAACTAGCACGTCAACTAGGCGACACAATTGATATCTCAGCATTTGACTATCAATCGGGTAAGATCATACAAAATCTGGCACCACCGTCGATCACATTCAATCGCTGTACTGGTCCGTCGTCGAGCTCGCTCAAGCGAAAGTACAAGCTCCCAGCTACAGCAACAGCCACAACCGTGCCACAATCAACGACGCCACCATTTTCGTTTGCCGGTGGATTTGGTGGAGTTCCATCCTCTAGTTCCTCCCATAGCATGTCGGCATCAAGTAGTAGTGGTAGTTCCTCACTTCAGTCATCAACTCTGAGACAGCATCTTGAGTTCAGCAGGGCCATTCGCACAGACGTCTCACTGGTGCCACCCATTCGACAGACTGCGTCAATCTTCAAGCAGCCCGTGACAGTGATCCACAATCACGAGAACGGCAAGGTGAAGCACGACCTGAAGAACGGCAATCAGGAGAAGCCGAAGCAACTCTTCTGGGAAAAGCGCTTGGAAGGACTGCGTGCGTGCAACATCACAGGCGAGGAGTTTGACAACATTGAGCTTCCACGTGGCATCAAGTCGGTCGGGCCGAATGTCGACGAGCAGACCGTGCTGCAATCTGTGGCCACGGCGTTACACGTCCAGAATCAGCCGGTCACCGGACAAACCTCGTCGAAAACGGAGCTAACGAAGAACTCCGGCGCATTCCTGAACCCCGATCAGCCGTTGATGCATTCGGTTTTGATTTCGGAGGACGACATCCGTCGCCAGGAGGACCGAGTGAACGTCGCCAGGCGGAAATTGCAAGACGCCCTTAAGTCTTAG
- Protein Sequence
- MNPNITIERKRVDCNSLPKGWQREEVLRKSGISAGKVDVYYYSPTGKKFDSKPQLARQLGDTIDISAFDYQSGKIIQNLAPPSITFNRCTGPSSSSLKRKYKLPATATATTVPQSTTPPFSFAGGFGGVPSSSSSHSMSASSSSGSSSLQSSTLRQHLEFSRAIRTDVSLVPPIRQTASIFKQPVTVIHNHENGKVKHDLKNGNQEKPKQLFWEKRLEGLRACNITGEEFDNIELPRGIKSVGPNVDEQTVLQSVATALHVQNQPVTGQTSSKTELTKNSGAFLNPDQPLMHSVLISEDDIRRQEDRVNVARRKLQDALKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694636;
- 90% Identity
- iTF_01541440;
- 80% Identity
- -