Xdes015812.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757045.1:539753-549077[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-11 1.1e-08 35.2 0.0 4 39 174 210 171 214 0.89 2 4 3.5e-12 2.8e-09 37.1 0.4 2 39 226 263 225 266 0.93 3 4 1e-15 8.3e-13 48.4 0.2 2 45 281 325 280 325 0.96 4 4 8.2e-19 6.6e-16 58.3 0.0 1 44 332 376 332 377 0.96
Sequence Information
- Coding Sequence
- ATGCCAGGCTCCAGAACAACCACAGTAAAATGCGAACCTCAATCTGACGAAGATGAAGACAGGCTTCAGTTGCCTGAACACTTCCAAAATAGTACGCATCCGTCAGAATGGAATTCCCTCACTTCTGTTAAAGTAGAAGATCACAATGACGACGCACTCGGCCTACCCACATTACTGCACCATTTACAGAGGTCCGAAGAGCTGGAGGAGCTGGCCCCGCCAGCGCCGGCCGCACCGTCCGCCACGCCAGTCTGCGTGAAACAGGAGCCCCAGGACTCCGCTATACACCTGGAGACGCTGGAGTCAGCTCCTAATTGCATGGGCTCGCTACTGGAGCGGCGCATGGTGCTATTGAAGCCAGCTGAAGTGCCCGACTCTGCAAGCTTTACGCCGCTGCAAACAATCAAGGATGAACCATCTTCTGAAGGAGAACAGCAGCACCTCAGTAGTGATGAGTTGAGCGACTCCTGCGGGCTCGCGGAGCCGCTGCGAGGGAGCCCTAAGAGCTGGACGCAGCAGGACATGGACAGCGCGCTGGACGCGCTCAGGAACCACAATATGAGCTTGACTAAGGCATCATCCACTTACGGCATCCCGTCAACGACGCTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAAGGCGCTGCTAAGTCGTGGTCCGAGGCCGACCTGCGGGCCGCGCTGCATGCCCTGAGGGCGGGCGCTATATCTGCTAACAAAGCTAGTAAGGCCTatgGCATCCCGAGCAGCACGCTGTACAAGATAGCTCGTCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCGTGTCCTGGCGGCGCGGCGACCTGGCGCGCGCGCTCGCCGCCATCCGCGCCGGCCGCGCCTCCGTGCAGCGCGCGGCCACGCAGTACGGCATACCCACCGGCACTCTATATGGACGATGCAAACGAGAAGGCATTGAACTTTCTCGTTCCAACCCCACGCCGTGGTCGGAAGATGCCATGGGAGAGGCGCTAGAAGCTGTCAGAGTTGGTCAGATGTCGATAAATCAGGCAGCAATTCACTACAACTTACCATATTCATCTCTTTACGGAAGATTCAAGCGCTGCAAGTACCAGGTTCAGCCTATGCCCCAAGAAATGCAAACCACTCCAGAAATGGTCCACCCAGACATAAACTACTACAACCAAACGCCCATGTACCCGGAACCAGACCCGCTCCAGCACTATCCTCAAGAGTTTGTTCAGGACCTGGATCCTTATGGGCAGGTGTACTATAACCAGAACTTTGGCAGTATTGTGACCAGCTGA
- Protein Sequence
- MPGSRTTTVKCEPQSDEDEDRLQLPEHFQNSTHPSEWNSLTSVKVEDHNDDALGLPTLLHHLQRSEELEELAPPAPAAPSATPVCVKQEPQDSAIHLETLESAPNCMGSLLERRMVLLKPAEVPDSASFTPLQTIKDEPSSEGEQQHLSSDELSDSCGLAEPLRGSPKSWTQQDMDSALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGRASVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQVQPMPQEMQTTPEMVHPDINYYNQTPMYPEPDPLQHYPQEFVQDLDPYGQVYYNQNFGSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267107; iTF_00119527; iTF_01335846; iTF_00662156; iTF_00661200; iTF_01529116;
- 90% Identity
- iTF_01529116;
- 80% Identity
- -