Ader016609.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388270.1:11992831-11998137[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.3e-12 6.2e-09 35.6 0.0 4 39 144 180 141 184 0.89 2 4 2.4e-11 2.4e-08 33.7 0.3 2 39 196 233 195 236 0.92 3 4 4.8e-15 4.7e-12 45.5 0.1 2 45 251 295 250 295 0.96 4 4 5.1e-19 5e-16 58.3 0.0 1 44 302 346 302 347 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGCTCCGGAATCTCTACCGTGAAATGTGAGCCCATGTCTGATGAAGAAGATGACGGTCCTCAGTTGCCTGACTTCTTTCAAAATAATACGAGCCCAGAAGGGTTGGAAGAGCTGGTCCCACTGGCACCGGCTGGGCCCGCGGCCACTCCCGTCTGCGTGAAACAGGAGCCGGTGGAGACCCCCGCCCTAATTCTAGAGACCTTAGAGTCTGCTACTCATTGCATGGGCTCTTTAGTGGAGAGACACATGGCGATATTGAGGTCAACTGAAGTGCCTGACTCCGCCAACTTCACGCCGCTGCAATCTGTTAAGGATGAACCGTCTTCTGATGGAGAACAACAGCACCTCAGTAGCGACGAGCTGAGTGACTCGTGCGGGCTGGCAGAGCCTCTGCGCGGGAGCCCCAAGAGCTGGACGCAGCAGGATATGGACAACGCACTGGATGCACTCAGGAATCACAACATGAGCTTGACTAAGGCGTCATCAACATACGGCATCCCCTCTACCACTCTTTGGCAGCGAGCCCACCGCCTCGGCATCGACACGCCGAAGAAGGAAGGCGCCACCAAGTCCTGGAGTGAGGCGGACTTGCGCGGGGCCCTTCATGCTCTCAGGGCCGGCGCTATCTCGGCCAACAAGGCCAGTAAGGCTTATGGAATACCCAGCAGCACCCTGTACAAGATAGCCCGCCGCGAAGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGCGACCTGCAGCGCGCGCTGGCCGCCATCCGCGCCGGCCGCGCCACCGTGCAGCGCGCCGCCTCGCAGTACGGCATCCCCACCGGCACTCTCTATGGGCGTTGTAAACGGGAAGGGATAGAACTATCTCGTTCAAACCCCACGCCTTGGTCTGAAGACGCCATGGGAGAGGCACTAGAAGCTGTCAGGGTTGGCCAAATGTCCATAAACCAGGCAGCCATACACTACAACTTACCATATTCATCACTTTACGGAAGATTCAAACGTTGCAAGTATCAGACTCAGCCTATGCCACAAGTGCAAAGTCCTCCCGGGATGGTCCACACCCAGCAAGAAATAAACTACTACCAGCAAATGCCCATGTACCCAGAACAAGATCATTCCACCATCCAACACTCATACCCTCACAACGAATTCGTCCAAGATACATCAACGCAAAACAATATGGTGCTAATACAGGAACCTTACTCGGGACAAGCGATGTATTACAACCAGAACTTCAGCAGCATAGCAACCAGCTGA
- Protein Sequence
- MPGSGISTVKCEPMSDEEDDGPQLPDFFQNNTSPEGLEELVPLAPAGPAATPVCVKQEPVETPALILETLESATHCMGSLVERHMAILRSTEVPDSANFTPLQSVKDEPSSDGEQQHLSSDELSDSCGLAEPLRGSPKSWTQQDMDNALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGATKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLQRALAAIRAGRATVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQPMPQVQSPPGMVHTQQEINYYQQMPMYPEQDHSTIQHSYPHNEFVQDTSTQNNMVLIQEPYSGQAMYYNQNFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528203;
- 90% Identity
- -
- 80% Identity
- -