Sbip009513.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439451.1:519755-525750[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 7.8e-09 35.5 0.0 4 39 174 210 171 214 0.89 2 4 4.4e-11 3e-08 33.6 0.3 2 39 226 263 225 266 0.92 3 4 2.4e-15 1.6e-12 47.2 0.2 2 45 281 325 280 325 0.96 4 4 5.3e-18 3.6e-15 55.7 0.0 1 44 332 376 332 377 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGTTCCGGAACTGCTACCGTAAAATGTGAGCCTCTctctgatgaagatgatgacagTTCTCAGTTACCAGATATTTTCCTGAATAACGCGCTGCCCTCGGAATTCCATTCACTAACTACTTTGAAAGTAGAAGTCGGTGGCTACAACGATGATAGTAAGCCTACACTGTTGCACCATTTACAGAGTCCGGAAGGGCTGGAAGAGCTGGCCCCGCTGGCGCCGGCGGGGCCCGCGGCCACGCCCGTCTGCGTCAAGCCGGAGCCCGAGGACTCCGCGTTGAGCCTCGAGACCCTGGAGTCGGCGCCACATTGCAAGGGCTCTTTTCTGGAGAGACACATGGCGCTGCTGAAGTCATCTGAAGTGCCCGACTCTGCCAGCTTCACGCCTCTTCAACCAGTTAAGGATGAGCCGTTTTCTGAAGGAgAACAACAGCAGCTCAGCAGCGACGAATTAAGCGACTCGTGCGGCCTGGCGGAGCCTCTGCGCGTCAGCCCCAAGAGCTGGACGCAGCAGGACATGGACAACGCGCTCGATGCGCTCAGGAACCACAACATGAGCTTGACCAAGGCGTCGTCCACTTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGAGGCCGACCTGCGCGGAGCCCTGCACGCGCTCAGGGCCGGCGCTATATCCGCCAACAAGGCTAGCAAGGCTTACGGCATCCCCAGCAGCACGCTGTACAAGATAGCTCGGCGCGAGGGCATCCGGCTGGCTGCGCCGTTCAACGCGGcgccggtggcgtggcggcgcgGCGACCTGGCGCGCGCGCTGCAGGCCATCCGCGCCGGCCGCGCCAGCGTGCagcgcgccgccgccaccTACGGCATCCCCACCGGCACGCTCTACGGGCGTTGCAAGCGGGAGGGCATCGAGCTGTCTCGATCCAACCCAACGCCGTGGTCGGAGGACGCCATGGGAGAGGCGCTCGAAGCCgtaagAATCGGTCAGATGTCGATAAACCAGGCAGCCATCCACTACAACTTACCCTATTCCTCACTCTACGGGAGATTCAAACGCTGCAAGTATCAAGCCCAGCCCATGCCCCAGCAAGAAATGCAAAACATTCCCGAAACGGTCCATCAGCCAGAGCACTATTACCACCAAATGCCGATGTATCCAGAGCCGCATTGCACCGTCCAGCAGCAATACCCTCAGGAGTTCATACAGGAGTCTCAGGTCGCGCTCCAAGACCAGTATTCGGGACACGCGATGTACTACAGCCAGGGCTTCAGCAGCATCGCGACCAGCTGA
- Protein Sequence
- MPGSGTATVKCEPLSDEDDDSSQLPDIFLNNALPSEFHSLTTLKVEVGGYNDDSKPTLLHHLQSPEGLEELAPLAPAGPAATPVCVKPEPEDSALSLETLESAPHCKGSFLERHMALLKSSEVPDSASFTPLQPVKDEPFSEGEQQQLSSDELSDSCGLAEPLRVSPKSWTQQDMDNALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLARALQAIRAGRASVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQPMPQQEMQNIPETVHQPEHYYHQMPMYPEPHCTVQQQYPQEFIQESQVALQDQYSGHAMYYSQGFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528203;
- 90% Identity
- -
- 80% Identity
- -