Xspa015222.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- -
- Assembly
- GCA_947086425.1
- Location
- OX352205.1:426031-430452[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-12 7.4e-09 35.4 0.0 4 39 175 211 172 215 0.89 2 4 2.3e-12 2.1e-09 37.1 0.4 2 39 227 264 226 267 0.93 3 4 6.8e-16 6.4e-13 48.4 0.2 2 45 282 326 281 326 0.96 4 4 5.3e-19 5.1e-16 58.3 0.0 1 44 333 377 333 378 0.96
Sequence Information
- Coding Sequence
- ATGCCAGGCTCCAGAACAACTCTAATAAAATGCGAACCGCAATCTGACGAAGACGAAGACAGACTCCAGTTGCCTGAACACTTCCAAATAATTACGCATCCGTCAGAATTGAATTCGCTCACTTCCGTAAAAGTAGAAGATCACAATGACGACGACGGACTCGGCATACCCACATTACTGCACCATTTACAGAGCTCCTCGGTGCTGGAGGAGCTGGCCCCTCCGGCGCCGGCCGCGCCCGCCGCCACGCCGGTCTGCGGCAAGCAGCGGCCCGAGGACTCCGACATACACCTCGAGACACTCGAGCCAGCTCCTAATTGCATGGGTTCCTTACTGGAGCGGCGCTTGGCACTTTTGAGGTCAGCTGAGGCGCCCAACTCTGCTAGCTTTACACCGCTGCAACCGATCAAGGATGAACCATCTTCTGAAGGAGAACAGCAGCCCCTCAGTAGCGACGAGCTGAGCGACTCGTGCGGGCTGGCGGAACCGCTGCGAGCCAGCCCCAAGAGTTGGACGCAGCAGGACATGGACCATGCGCTCGATGCACTCAGGAACCACAACATGAGCTTGACCAAGGCATCGTCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAAGGCGCCGCCAAGTCCTGGTCCGAGGCAGACCTGCGGGCCGCGCTGCACGCGTTGAGGGCCGGCGCTATATCCGCTAACAAGGCTAGTAAGGCCTATGGCATCCCGAGCAGCACCCTGTACAAGATAGCGCGCCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCGTGGCGTGGCGCCGCGGCGACCTGGCGCGCGCGCTGGCGGCCATCCGCGCCGGGCGCGCCTCCGTGCAGCGAGCCGCCACGCAGTATGGGATACCCACCGGCACTCTATACGGACGATGCAAACGAGAAGGAATTGAACTTTCCCGGTCCAACCCCACGCCGTGGTCGGAAGATGCCATGGGAGAAGCGCTAGAAGCTGTCAGAGTTGGTCAGATGTCGATAAACCAGGCAGCAATCCACTACAACCTGCCATATTCATCTCTCTACGGAAGATTCAAACGTTGCAAGTACCAGGTTCAGCCTTCTCCCCAACAAGAAATGCAAACAACTCCTGAAATGGTCCACCAAGACACAACCTACTACAACCAAACGCCCATGTACCCAGAACCTGACCAATCAAGCCACCTCTACCCTCAAGAGTTTGTTCAGGAGCTGGATCCTTACGCCCAGGTGTTCTATAACCAGAACTTTGGCAGTATCGTGACCAGCTGA
- Protein Sequence
- MPGSRTTLIKCEPQSDEDEDRLQLPEHFQIITHPSELNSLTSVKVEDHNDDDGLGIPTLLHHLQSSSVLEELAPPAPAAPAATPVCGKQRPEDSDIHLETLEPAPNCMGSLLERRLALLRSAEAPNSASFTPLQPIKDEPSSEGEQQPLSSDELSDSCGLAEPLRASPKSWTQQDMDHALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLARALAAIRAGRASVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQVQPSPQQEMQTTPEMVHQDTTYYNQTPMYPEPDQSSHLYPQEFVQELDPYAQVFYNQNFGSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528203;
- 90% Identity
- iTF_01528203;
- 80% Identity
- -