Etri010968.1
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- -
- Assembly
- GCA_951394285.1
- Location
- OX596148.1:503400-506918[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9e-12 1.3e-08 34.8 0.0 4 39 170 206 167 210 0.89 2 4 1.7e-12 2.6e-09 37.1 0.4 2 39 222 259 221 262 0.93 3 4 1.1e-15 1.6e-12 47.4 0.2 2 45 277 321 276 321 0.96 4 4 4.7e-19 6.9e-16 58.1 0.0 1 44 328 372 328 373 0.96
Sequence Information
- Coding Sequence
- ATGGCGGCCTCCGGGTCCGCTACAGTTAAATGCGAACCTAACTCTGATGAAGATGACGACAGACCCCAGTTGCCAGAACTCTTCATAAACAACACGcATCCCTCAGAGTTTAATACTCCCGTAAAAGTAGAAGGTCACAATGGCGAGCGCATCATGCCCTCGTTGCTACAACATTTACGGAGCGCCGATGGGCTTGAGGAGCTGGCCCCACCAGCGCCGGCCGCGCCCTCCGCCACGCCCGTCTGCGTGAAGCAGGAGCCCGGGGACTCCGCGACACACCTGGAGACCCTGGAGTCAAATCCTCATTGCACGGGCTCTCTATTGGAGAGGCGCATGGCGTTATTGAGGTCAACTGAAGTCCCTGATTCTGCCAGCTTCACGCCACTGCAACCAATTAAAGATGAACCATCTTCTGAAggagAACAGCAGCACCTGAGCAGCGATGAGTTGAGCGACTGCGGGCCGACGGAGCCGCTGCGGGGGAGCCCCAAGAGCTGGACGCAGCAAGACATGGAGAACGCGCTGGATGCACTGAGGAATCATAACATGAGCTTGACTAAGGCATCGTCAACATATGGCATTCCATCCACGACACTATGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAAGGCGCCGCCAAGTCCTGGAGTGAGGCCGACCTGCGAGCTGCCCTGCATGCGCTCAGGGCTGGAGCCATCTCTGCTAACAAGGCCAGCAAGGCGTATGgtatCCCCAGCAGCACTTTGTACAAGATAGCGCGTCGCGAGGGCATCCGTCTGGCTGCGCCGTTCAACGCGGCCCCCGTAGCGTGGCGGCGCGGGGACCTGGCGCGCGCCCTCGCCGCCATCCGTGCCGGCCGCGCCAGCGTGCAGAGAGCTGCACACCAGTACGGGATACCTACAGGCACTCTATATGGTCGTTGCAAGCGAGAAGGCATTGAGCTGTCTCGCTCTAACCCCACGCCGTGGTCTGAAGATGCCATGGGTGAGGCACTGGAAGCTGTCAGaGTTGGCCAAATGTCGATAAATCAGGCAGCAATTCACTACAACTTGCCATATTCATCACTTTACGGAAGATTTAAGCGTTGCAAGTATCAGGCTCAGCCAATGCCACAACAGGGACTACAAACTCCAGAAATGGTCCATCAAGAAACCAACAGTAACTACTACCATCAAGCGCCCTACTATCCTGAACAGGAGCAGACTCAGCTCCCGTACCACCAGGAGTTTGTGCCGGATTCCCACAATATTGACCCTTACGGACAAGTGTATTACAACCAGAACTTTGGCAGTATTGTCACCAGTTGA
- Protein Sequence
- MAASGSATVKCEPNSDEDDDRPQLPELFINNTHPSEFNTPVKVEGHNGERIMPSLLQHLRSADGLEELAPPAPAAPSATPVCVKQEPGDSATHLETLESNPHCTGSLLERRMALLRSTEVPDSASFTPLQPIKDEPSSEGEQQHLSSDELSDCGPTEPLRGSPKSWTQQDMENALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLARALAAIRAGRASVQRAAHQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQPMPQQGLQTPEMVHQETNSNYYHQAPYYPEQEQTQLPYHQEFVPDSHNIDPYGQVYYNQNFGSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01528203;
- 90% Identity
- -
- 80% Identity
- -