Vger002780.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- tfip11
- Assembly
- GCA_905340365.1
- Location
- HG996530.1:2775742-2778997[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-98 2.2e-94 315.8 18.0 1 275 399 666 399 666 0.98 2 2 0.00046 3.3 6.9 0.4 242 273 678 709 669 711 0.89
Sequence Information
- Coding Sequence
- atgtcaGAAGACGAAGTAGAAAGTTTCGAGATCTCCTatgattttgaaaatgaatttaatattaatcgtcCTAGACGAAAACTTTCTAAAAAACAGCAGATGCTCGGTATCTGGGCAGATGATAGCGACGAGGATGAACTTTCTGCGAGACCTTCCTTCAAAACATATAACAAAGGTCCAAAGAATTATACGGTTCCGGTTAATTTTGTTGCCGGAGGTATTCAACAAGCTGGTAAACcagcagaagaaaaagaggataaagaaaaagatgatgatgatgacgacgatgacgatgatgatacgAGGACGTCTCAAAGAGATGGGGAGGGATATTTTAATAGTTCAagttCAGAGGATGAAAAACCAAGTAATTCCAAACAACGTACATCATTCTCATTGAACGTAGAAGGAGATATTGCTGGATTACGTAAAAAGAGATATCAAGTGAATCCTTCATTCATGAAAAGTGGAGTAGGCAGTTGGGAAGTACATACAAAAGGAATTGGAGCTAAACTGTTACTACAGATGGGTTTTGAACCTGGCAAAGGATTGGGAAAGCAATTACAAGGAATAAGTGCACCAGTAGAAGCTCATTTTAGAAAAGGTAGAGGTGCTATTGGTGCGTACGGGCCGGAGAAAGGACCAAAAAtggttgaaaaaagaaaagaagaagcagaggATGCAAAGGATTCTAAGTCTAAAGTATCTCAATGGCGAAAAGGGGATAGTatcaacaataaaaaaaaagtcaaatatTCATATCGGAGTGTTGATCAAGTTCTAGAAGATGGAAAATTAAAACCAAATAGAAAACTTCCACTTTCGAGTGAAATGAGCAGAGTGAAAGTTATAGATATGACAGGACCAGAACAAAGAATTTTAAGCGGTTATCATGCAATAGCCAGTGGCCAACAATATCCCGATGAAACTATTCCAAGTGTGAATAAAAaggacaaaattaatttttctttgccaGAATTACAGCATAATTTGAACTTGCTTGTAGATATGTGTGAACAAGATATTATACAGAATGATAGAAGAACAAGACACTTGAGCGATAGAGTAATAGCGTTAGAAgcggagaaaagaaatctgtCTAAGGTTGTAGATCAACATGGACAACTCATTGATACTTTAGAAAATGTTCTAGCAGTTGTAGATAGATTAATGGATGAAACAAGTGAGATAACGTTGCAAGATACTGCTGATGTATTTAAAAGTTTGcaagataaatattatgagGAGTACAAGATGTATGAATTAGGTGATTTGGCAACTAGTTTTGTGGgtccaaaaataaaagattcttTACTTTCTTGGAATCCATTAATGCAACCAAAGCAgcctataaaattatttgaacaatggaaagaaatattagagACTGGTACAAGTCCACTTCAAACAAGAACGATACAACCTTACGACCAACTTGTTTGGAATGCATGGATGCCTTCTATCAGAGGAGCTGTACaaCAGTGGACATGCAGGCAACCAGATTCGTTAATAGAGCTATTAGAGCACTGGATACCATTGCTACCTGGTtggatttttgaaaatattttggatCTATTAATACTTCCTAAACTTACTTTAGAGGTAGAAGAATGGAACCCACTCACAGATACTGTTCCAATACATACATGGATCCATCCTTGGTTACCATTAATGCGTAATTGGTTGGACACATTAATATATCCAATTATAAGACGCAAACTTGGTTCTGCTTTGGGAGGTTGGCATCCGTCAGACAGATCAGCAAGATTAATGTTACAACCTTGGGCAGAAGTATTTGCTAAGGGTGATATGGAAGCTTTtctagtaaaaaatattataccaaAACTTCAAATAGCTCTTTCCGAGTTTGTTATAAATCCACATCAACAGCATTTGGATCAATGGAATTGGGTGATAGAATGGAAAGAATTAATACCATCCCATATAATGGCGAATTTACTCGataaattcttctttcctaAATGGGAACAAGTTTTGACTTTTTGGTTAAATCATTCTCCAAATTACGATCAAGTAATGAATTGGTATATGGGATGGAAAGGAATGTTGAGCGATAAGTTATTGGCAGAACCATTAGTGAAAGaacATTTTAAGAAGGCGATCGATATGTTAAATAGAGCCGTGGCTGCACCCCCGAGTCACCAACCAGGAACTATGGACCAAGTTTCGTACTTGAACAATTTGGAGAGGAATCAACCGACGATAATGTCACAGATGTCATCGGTGGTACAACCGAGGATGGAGAGGTTGGCAGAAGCAGTGAGAATAGCAGCACCACAAATTCATCTAGGCTTTAAAGATCTCATACAAAGGAAGTGTGAAGAACGAGGTATCCTTTTCATGCCTATTCCAAATAAATACAGGGAAGCGAAGCAAGTTTACAAAGTGGGTAATGTTCAAGCGTATATAGACGGCAAAATGATATTTGTTTATCATAATGGAGCCAATTGGACGCCGACGAATGTGAACGCCTTACTCGATATGGCAGAACTTTAG
- Protein Sequence
- MSEDEVESFEISYDFENEFNINRPRRKLSKKQQMLGIWADDSDEDELSARPSFKTYNKGPKNYTVPVNFVAGGIQQAGKPAEEKEDKEKDDDDDDDDDDDTRTSQRDGEGYFNSSSSEDEKPSNSKQRTSFSLNVEGDIAGLRKKRYQVNPSFMKSGVGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHFRKGRGAIGAYGPEKGPKMVEKRKEEAEDAKDSKSKVSQWRKGDSINNKKKVKYSYRSVDQVLEDGKLKPNRKLPLSSEMSRVKVIDMTGPEQRILSGYHAIASGQQYPDETIPSVNKKDKINFSLPELQHNLNLLVDMCEQDIIQNDRRTRHLSDRVIALEAEKRNLSKVVDQHGQLIDTLENVLAVVDRLMDETSEITLQDTADVFKSLQDKYYEEYKMYELGDLATSFVGPKIKDSLLSWNPLMQPKQPIKLFEQWKEILETGTSPLQTRTIQPYDQLVWNAWMPSIRGAVQQWTCRQPDSLIELLEHWIPLLPGWIFENILDLLILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLMRNWLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVIEWKELIPSHIMANLLDKFFFPKWEQVLTFWLNHSPNYDQVMNWYMGWKGMLSDKLLAEPLVKEHFKKAIDMLNRAVAAPPSHQPGTMDQVSYLNNLERNQPTIMSQMSSVVQPRMERLAEAVRIAAPQIHLGFKDLIQRKCEERGILFMPIPNKYREAKQVYKVGNVQAYIDGKMIFVYHNGANWTPTNVNALLDMAEL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01232993; iTF_01234340; iTF_01514820; iTF_01514152; iTF_01232396; iTF_01235022; iTF_01233651; iTF_01089991; iTF_01512825; iTF_01512181;
- 90% Identity
- iTF_01514820; iTF_01514152; iTF_01234340; iTF_01232993; iTF_01232396; iTF_01235022; iTF_01233651; iTF_01512825; iTF_01512181;
- 80% Identity
- -