Vman008402.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vespa mandarinia
Gene Symbol
tfip11
Assembly
GCA_014083535.1
Location
JACHAV010000036.1:1957534-1961297[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.3e-98 3.3e-94 315.0 17.8 1 275 400 667 400 667 0.98
2 2 0.00046 2.9 6.9 0.4 242 273 679 710 670 712 0.89

Sequence Information

Coding Sequence
atgtcAGAAGACGAAGTAGAAAGTTTCGAGATCAGCtatgattttgaaaatgaatttaatataaatcgtcCTAGACGAAAACTTTCTAAAAAACAGCAGATGCTCGGTATTTGGGcagatgatagtgatgaagaTGAACTTTCTGCACGACCTTCTTTCAAAACCTATAACAAAGGGCCAAAAAATTATACAGTTCCGGTTAATTTTGTTGCCGGAGGTATTCAACAAGCTGGTAAACCAccagaggaaaaagaggataaagaaaaagatgatgatgatgatgatgatgatgatgatgatgacacaAAAACTTCTCAAAGAGATGGGGAAGGATATTTTAATAGTTCAAGctCGGAGGATGAAAAACCAAGTAATTCTAAACAACGTACGTCATTCTCATTAAACGTAGAAGGAGATATTGCTGGATTACGTAAAAAGAGATATCAAGTAAATCCTTCATTCATGAAAAGTGGTGTGGGTAGTTGGGAAGTGCACACAAAAGGGATTGGAGCCAAACTGTTATTACAgATGGGTTTTGAACCTGGCAAAGGGTTAGGAAAGCAATTACAAGGTATAAGTGCACCAGTAGAAGCTCATTTTAGAAAAGGTAGAGGTGCTATTGGTGCATATGGTCCAGAGAAAGGACCAAAAGTagttgaaaaaaggaaagaagaagcagaGGATGTAAAGGATTCTAAGCCTAAAGTATCCCAATGGAGAAAAGGGGATAGCattagtaataagaaaaaagtcaaATACTCATATCGCAGTGTTGATCAAGTTCTAGAAGATGGAAAATTAAAACCAAATAGAAAACTTCCACTTTCAAGTGAAATGAGTAGAGTGAAAGTTATAGATATGACAGGGCCAGAACAAAGAATTTTAAGCGGTTATCATGCAATAGCCGGTGGCCAGCAATATCCAGATGAAACTATACCAAGtgttaataaaaaggataaaattaatttttctttgccGGAATTACAACATAATTTAAACTTGCTTGTAGATATGTGTGAACAAGATATTATACAGAATGATAGAAGAACAAGACATTTGAGTGATAGAGTAATAGCATTAGAagcagagaaaagaaatctgtCCAAGGTTGTAGATCAACATGGACAACTCATTGATACTTTAGAAAATGTTCTAGCAGTTGTTGATAGATTAATGGACGAAACAAGTGAGATAACATTACAAGATACCGCTGATGTATTTAAAAGTTTGCAAGATAAGTATTATGAGGAATACAAGATGTATGAATTGGGTGATTTGGCTACTAGTTTTGTGGgtccaaaaataaaagattctttactttcttgGAATCCATTGATGCAACCAAAGCAgcctataaaattatttgaacagtggaaagaaatattagagACTGGTACAAGTCCACTTCAATCAAGAACAATACAACCTTATGACCAACTGGTTTGGAATGCATGGATGCCTTCTATCAGAGGAGCTGTGCaGCAATGGACATGCAGGCATCCAGATTCGTTAATAGAGCTATTAGAGCATTGGATACCATTGTTACCTGGTtggatttttgaaaatattttagatcTATTAATACTTCCTAAACTTACTTTAGAAGTAGAAGAATGGAACCCCCTCACAGATACTGTTCCAATACATACATGGATTCATCCTTGGCTACCATTAATGCgTAATTGGTTGGATACATTAATATATCCTATTATAAGACGTAAACTTGGTTCTGCTTTGGGAGGTTGGCATCCGTCAGATAGATCAGCAAGATTAATGTTACAACCTTGGGCAGAAGTATTTGCAAAGGGTGATATGGAAGCTTTTCtagtgaaaaatattataccaaAACTTCAAATAGCTCTTTCCGAGTTTGTTATAAATCCACATCAACAGCATTTGGATCAATGGAACTGGGTAATAGAATGGAAAGAATTAATACCATCCCATATAATGGCGAATTTACTTGataaattcttctttcctAAATGGGAACAAGTTTTGACTTTTTGGTTAAATCATTCTCCAAATTATGATCAAGTCATGAACTGGTATATGGGATGGAAGGGAATGCTGAGCGATAAGTTATTGGCAGAGCCATTAGTGAAAGAACACTTTAAAAAGGCGATCGATATGCTAAATAGAGCCGTGGCTGCACCTCCGAGTCATCAACCAGGAGCTGCTATGGACCAAGTTTCATACTTGAACAATTTGGAGAGGAATCAACCGACGATAATATCATCAGTGGTACAACCGAGGATGGAGaggTTGGCAGAAGCAGTGAGAATAGCAGCACCACAAATTCATTTAGGCTTTAAAGATCTCATACAGAGAAAATGTGAAGAACGAGGTATCCTTTTCATGCCTATTCCAAATAAATACAGGGAAGCGAAGCAAGTTTACAAAGTGGGTAATGTCCAAGCATATATAGACggtaaaatgatatttgtttATCATAATGGAACCAATTGGACGCCGACGAATGTGAACGCCTTACTCGATATGGCGGAACtttag
Protein Sequence
MSEDEVESFEISYDFENEFNINRPRRKLSKKQQMLGIWADDSDEDELSARPSFKTYNKGPKNYTVPVNFVAGGIQQAGKPPEEKEDKEKDDDDDDDDDDDDTKTSQRDGEGYFNSSSSEDEKPSNSKQRTSFSLNVEGDIAGLRKKRYQVNPSFMKSGVGSWEVHTKGIGAKLLLQMGFEPGKGLGKQLQGISAPVEAHFRKGRGAIGAYGPEKGPKVVEKRKEEAEDVKDSKPKVSQWRKGDSISNKKKVKYSYRSVDQVLEDGKLKPNRKLPLSSEMSRVKVIDMTGPEQRILSGYHAIAGGQQYPDETIPSVNKKDKINFSLPELQHNLNLLVDMCEQDIIQNDRRTRHLSDRVIALEAEKRNLSKVVDQHGQLIDTLENVLAVVDRLMDETSEITLQDTADVFKSLQDKYYEEYKMYELGDLATSFVGPKIKDSLLSWNPLMQPKQPIKLFEQWKEILETGTSPLQSRTIQPYDQLVWNAWMPSIRGAVQQWTCRHPDSLIELLEHWIPLLPGWIFENILDLLILPKLTLEVEEWNPLTDTVPIHTWIHPWLPLMRNWLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVIEWKELIPSHIMANLLDKFFFPKWEQVLTFWLNHSPNYDQVMNWYMGWKGMLSDKLLAEPLVKEHFKKAIDMLNRAVAAPPSHQPGAAMDQVSYLNNLERNQPTIISSVVQPRMERLAEAVRIAAPQIHLGFKDLIQRKCEERGILFMPIPNKYREAKQVYKVGNVQAYIDGKMIFVYHNGTNWTPTNVNALLDMAEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01513470;
90% Identity
iTF_01513470;
80% Identity
-