Tcas003189.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_000002335.3
- Location
- NC:5839640-5851547[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-105 2.6e-101 338.4 26.9 20 300 1 278 1 278 0.98 2 2 0.012 1.5e+02 1.0 6.0 120 171 276 327 275 353 0.81
Sequence Information
- Coding Sequence
- ATGCGCGAACTGGAGAGGCAACAGAAAGAACAAGAGGAAAATGCCGACCGACAATTCGATATGTTGGCAGAACCGATGGCCAGGACTGCGAGGACGGTTACTGCAGGGAGCAGGTATCTCTCCAGCAGGAGGAGCTCCGAGGACTCGCTGGAGGACGGGGGCAGTCTCAGGGATTTGCGGAACGAACTAAAAGAGTATGAGGAGAAGTTTCGTAAGGCGATGATCGCCAACGCCCAACTCGATAACGACAAAACGTCTCTCACATATCAACTGGAACTGCTTAAGGATAGGTTAGAAGAACTAGAAGAGGAGCATTCGCAGTTGAAGCGAGAGCACCGGGAAAAGTGCCGCGACTTCGACCAATTAAAACGGTTGTGCGCAAAATTAAAAGATGATTTGGCTGTGACTCGGGCTGAACTCGAAGAACGCGATCAGTTGATAAGCGAGAAGGGTTTAGTCATCGTCGGCGAGGACTCGATCAACGAAGAGGAACAAAGGAACGGCGATGTCAGTCTTAGTAGTATAGGTACACCGAAAAAGGCTTTAGTTAGTGTAGAAAATGCCCAGCTGTTGCAAAGCGCGGGCGAAGGCAGTCTGGACGTGCGATTAGCGAAATTGATGAAAGAAAAAGGCGAACTGCAGGATCAAATTAGCCATTTAAAATTAGAATTAGAAGAGGAGCGAAGCAAGCGGAAAAAATCGAGTGCGGGCGGCACGTTGAACGGGCCGTCGTCGGACCCCGACTTGGACGAAATAGACATTCAAAGAGAGGCGAGTAAACAGCTCGGGGATTACAAATTCCGGGCGCAAAAGGCCGAGCAAGACGTCGCCACCTTGCAGGCGACCGTTGCTCGGCTCGAGAGCCAAGTCATTAGGTACAAGGCTGCGGCCGAAGTCTCGGAGAAGGCCGAGGAGGCCCTAAAGGCCGAAAAACGCAAGCTGCAAAGAGAGGCACGGGAGGCGCAGAGTCGGGCCGAGGAATTGGAAACATCAAACACACACTTACTGAAACGTTTAGATAAATTGAAGAATGCGAAATCAGCGTTACTGAAAGAACTTTGA
- Protein Sequence
- MRELERQQKEQEENADRQFDMLAEPMARTARTVTAGSRYLSSRRSSEDSLEDGGSLRDLRNELKEYEEKFRKAMIANAQLDNDKTSLTYQLELLKDRLEELEEEHSQLKREHREKCRDFDQLKRLCAKLKDDLAVTRAELEERDQLISEKGLVIVGEDSINEEEQRNGDVSLSSIGTPKKALVSVENAQLLQSAGEGSLDVRLAKLMKEKGELQDQISHLKLELEEERSKRKKSSAGGTLNGPSSDPDLDEIDIQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEVSEKAEEALKAEKRKLQREAREAQSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415112;
- 90% Identity
- iTF_01480885; iTF_00167651; iTF_00639546; iTF_00870576;
- 80% Identity
- -