Aver007742.1
Basic Information
- Insect
- Asbolus verrucosus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_004193795.1
- Location
- QDEB01071871.1:5778-10392[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-109 2.6e-105 351.7 35.5 10 300 57 344 55 344 0.97 2 2 0.011 1.6e+02 1.1 4.0 120 174 342 393 341 411 0.80
Sequence Information
- Coding Sequence
- atggctgAGAATTCCGTTAAAATTGACGGCGTTACCAAAACGGAGAGTTCGACCGATGTCGACGGGCCGAGGGTGTGCGCCGGGGCGGACGATGTTATTCAACAGTTAATGCTAAAGACTAGTGACGAAGTATTTCGCGTTCCGTGGCGATATTTCGAAATTGTTCATGAGGCCAGAGCTGAAGCTAGGGAGATACGTATGCGCGAACTGGAGAGACAGCAGAAGGAGCAAGAGGAAAATGCCGATAGACAATTCGATATGTTGGCCGAACCTATGGCCAGAACGGCCAGGACCTCCGCTGCTGGAAGCAGGTATCTGTCCAGCAGGAGAAGTTCCGAAGATTCCTTGGAGGATGGCGGCAGCCTCAGGGATTTGCGGAATGAACTGAAGGAATTTGAGGAAAAATTCCGAAAGGCGATGATCGCCAACGCCCAACTCGATAACGACAAGACCTCTCAGACATATCAGCTGGAATTACTTAAGGATAGGTTGGAAGAGTTGGAAGAGGAGCATTCCCAGTTGAAACGAGAACACCGAGAGAAATGTCGAGAACACGACCAACTCAAACGGTTGTGCGCAAAGTTAAAAGATGATTTGGCTGTGACCAAGGCTGAACTGGAAGAAAGAGACCAATTAATAAGCGAAAAAGGTTTAGTCATTGTCGGTGAAGAGGTAACCAACGAAGAAGAACAAAGAAACGGCGATATAAGTCTAAATAGTATAGGTACACCGAAGAAGGCTTTAGTTAGTGTAGAAAATGCACACCTGTTAGAAAGTGCGGGCGAAGGAAGTCTAGATGTGCGGCTGGCCAAATTCACGAAAGAAAAAAGCGAACTGCAAGATCAAATTAGtcatttgaaattagaattagAAGAGGAAAGgaacaaaaggaaaaagtcAAACTCAATCAGCACACTAAATGGACCATCTTCCGAACACGATTTAGACGAAATAGATCTACAGAGGGAAGCGAGCAAACAGCTCGGCGATTACAAATTCCGGGCGCAAAAGGCGGAACAAGACGTCGCCACTTTGCAGGCCACAGTAGCGAGGCTAGAAAGTCAAGTTATTCGGTATAAAGCTGCCGCTGAAGTTTCAGAAAAAGCCGAAGAAGCACTGAAAgctgaaaaacgaaaattacaaAGAGAGgCGAGAGAGGCGTTGAGTAGGGCAGAAGAACTGGAGACGTCAAACacacatttattaaaacgatTAGATAAATTGAAGAACGCAAAGTCGGCACTATTGAAAGAACTTTGA
- Protein Sequence
- MAENSVKIDGVTKTESSTDVDGPRVCAGADDVIQQLMLKTSDEVFRVPWRYFEIVHEARAEAREIRMRELERQQKEQEENADRQFDMLAEPMARTARTSAAGSRYLSSRRSSEDSLEDGGSLRDLRNELKEFEEKFRKAMIANAQLDNDKTSQTYQLELLKDRLEELEEEHSQLKREHREKCREHDQLKRLCAKLKDDLAVTKAELEERDQLISEKGLVIVGEEVTNEEEQRNGDISLNSIGTPKKALVSVENAHLLESAGEGSLDVRLAKFTKEKSELQDQISHLKLELEEERNKRKKSNSISTLNGPSSEHDLDEIDLQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEVSEKAEEALKAEKRKLQREAREALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415112;
- 90% Identity
- iTF_01480117;
- 80% Identity
- -