Eagr010832.1
Basic Information
- Insect
- Eledona agricola
- Gene Symbol
- lrrfip2
- Assembly
- GCA_964023215.1
- Location
- OZ026857.1:21456277-21458140[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-114 2.5e-110 368.8 34.4 1 300 35 330 35 330 0.95 2 3 0.0067 1.5e+02 1.8 4.6 120 171 328 379 327 391 0.87 3 3 0.099 2.2e+03 -2.1 5.5 193 236 360 402 343 405 0.52
Sequence Information
- Coding Sequence
- ATGACGGACCGTTTGGAAGCTGGGGGCGTCGCGGAACCGCGGACGCAAATCGCCGACGGCGACGATGTCATCCAGCAGTTGATGGAGAGCACCAGCGACGAAGCGGAAGCGCGACTTTGGGCGAAGAGACAGGCCAGAGCCGAGGCCAGGGAGATTCGTATGCGCGAGCTGGAGCGGCAGCAGAAGGAACAGGAGGAGAATGCGGACCGACAGTTTGACATGCTGGCGGAACCCATGGCCAGGACCCGGACTTCGGGCACCAGCAGCCGGTACCTCAGCAGTCGGCGAAGCTCGGAGGACTCGCTCGAGGACGGCGGCAGTCTCAGGGACCTGCGGAACGAACTGAAGGAGCTGGAGGATAAATTCCGCAAGGCGATGATCGCGAACGCCCAGCTGGACAACGACAAGACCTCTCTGACGTACCAGCTGGAGCTGCTCAAAGATCGGCTCGAGGAGCTGGAGGAGGAGCATTCGCAACTGAAGCGGGAGCATCGCGAGAAGTGTCGCGAACACGACCAACTCAAGCGGCTGTGCGCGAAGTTGAGGGACGATTTGGCTGTGACCAGGGCTGAGCTGGAGGAGCGCGATCAGCTGATCAGCGAGAAGGGGTTGGTGATCGTCGGCGAGGACTCCTTCGCCGAGGAGGAGCAGCGGAACGGCGACGTCAGTCTCAGTAGCATAGGGACGCCGAAAAAGGCGCTAGTTAGTGTAGAAAATGCCCAGTTGCTTGAAAGCGCGGGCGAGGGCAGTCTGGACGTGCGGTTGGCCAAGTTCACCAAGGAGAAGGGCGAGCTGCATGATCAAATTAGCCATTTGAAATTAGAGTTGGAGGAGGAGAGGAGTAAGCGGAAGAAGTCGAACGCGTCCAGCACGCTGAACGGACCCAATTCGGACATCGACGCCGACGAGCTCGACATTCAAAGGGAGGCAAGCAAGCAGCTCGGAGACTACAAATTCAGGGCGCAGAAGGCCGAACAGGACGTCGCCACTTTGCAAGCGACCGTGGCGAGGTTGGAGAGTCAGGTTATAAGATACAAGGCGGCGGCTGAAGTGTCGGAAAAAGCGGAAGAAGCGCTCAAAGCGGAAAAAAGAAAACTGCAAAGAGAGgcACGAGAGGCGCAGAGCCGAGCCGAAGAATTGGAAACCGCCAACACGCACCTATTAAAACGATTAGATAAATTGAAGAACGCGAAATCGGCGCTTTTGAAAGAACTCTGA
- Protein Sequence
- MTDRLEAGGVAEPRTQIADGDDVIQQLMESTSDEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPMARTRTSGTSSRYLSSRRSSEDSLEDGGSLRDLRNELKELEDKFRKAMIANAQLDNDKTSLTYQLELLKDRLEELEEEHSQLKREHREKCREHDQLKRLCAKLRDDLAVTRAELEERDQLISEKGLVIVGEDSFAEEEQRNGDVSLSSIGTPKKALVSVENAQLLESAGEGSLDVRLAKFTKEKGELHDQISHLKLELEEERSKRKKSNASSTLNGPNSDIDADELDIQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEVSEKAEEALKAEKRKLQREAREAQSRAEELETANTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415112;
- 90% Identity
- iTF_01480117;
- 80% Identity
- -