Lory004626.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030157265.1
- Location
- CM058050.1:8927434-8931510[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-116 1e-112 376.3 35.3 1 300 67 363 67 363 0.97 2 2 0.03 2.5e+02 0.6 4.5 120 174 361 412 360 432 0.79
Sequence Information
- Coding Sequence
- ATGGTATTATACAGTTTATTACGGTGTTGTTTcgtgagtgaaaaaattatcagagCAATGGTAGTTGCTCCGGAAGTTGTGATGGATTCGAAATGGAGTTATCAAATACAAAGAAGTCCTTCTTTAAGCGATTGTCTTTACGAAAATGCTTCAACTCACGTTTTGTTTGTGACTACGGTTTCAGCATGTAAGAAAAATgCGGAAGCACGTCTGTGGGCCAAACGACAGGCCAGAGCTGAGGCAAGGGAGATACGTATGCGCGAACTGGAGAGACAACAGAAGGAACAAGAAGAAAATGCTGATCGACAATTCGATATGTTATCGGAGCCCATGGCGAGGACGGCGAGAACGGCCGCTGGCGGCAGTAGGTATCTTTCGAGTAGAAGAAGTTCTGAAGACTCGCTGGAAGATGGGGGCAGTCTCAGGGATTTACGGAACGAACTGAAGGAgtatgaagaaaaatttcgaaaagcAATGATCGCCAACGCCCAACTGGATAACGACAAAACCTCTTTAACATATCAGTTGGAGTTACTTAAAGATAGGTTAGAGGAATTAGAAGAAGAACACTCTCAACTGAAAAGAGAACATCGTGAAAAATGTCGCGAACATGAGCAATTAAAAAGGTTGTGTGCTAAATTGAAAGATGATTTGGCTGTGACTAGAACGGAACTAGAAGAACGCGATCAATTAATAAGCGAAAAAGGTTTAGTAATTGTCGGCGAAGACACAATCAACGATGAAGAACAAAGAAATGGCGATGTTAGTTTAAATAGTATAGGTACGCCGAAGAAGGCTTTAGTTAGTATAGAAAATGCTCAACTATTGGAAAGTGCGGGAGAAGGAAGTTTAGATGTTCGGTTGGCGAAatttatgaaagaaaaaagtgaattACAAGATCAGATTAGtcatttaaaattagaattagaaGAAGAAAGAAGCAAAAGAAAGAAATCAAATGCGGCCAGTACGTTGAATGGTCCATCTTCAGATTACGATATGGATGAAATCGACATACAGAGAGAAGCCAGTAAACAGCTGGGCGACTATAAATTTCGTGCTCAAAAAGCTGAACAAGATGTTGCTACTTTACAAGCAACGGTGGCTAGGTTAGAAAGTCAAGTTATCCGGTATAAAGCAGCGGCTGAAGTTTCAGAAAAAGCTGAAGAAGCATTGAAAGCTGAAAAGCGAAAATTGCAAAGAGAGgcAAGAGAAGCCTTAAGCAGAGCAGAAGAATTGGAAACTTCAAATACACATTTGTTAAAAAGATTAGATAAACTGAAGAATGCCAAATCAGCACTTCTAAAAGAACTTTGA
- Protein Sequence
- MVLYSLLRCCFVSEKIIRAMVVAPEVVMDSKWSYQIQRSPSLSDCLYENASTHVLFVTTVSACKKNAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLSEPMARTARTAAGGSRYLSSRRSSEDSLEDGGSLRDLRNELKEYEEKFRKAMIANAQLDNDKTSLTYQLELLKDRLEELEEEHSQLKREHREKCREHEQLKRLCAKLKDDLAVTRTELEERDQLISEKGLVIVGEDTINDEEQRNGDVSLNSIGTPKKALVSIENAQLLESAGEGSLDVRLAKFMKEKSELQDQISHLKLELEEERSKRKKSNAASTLNGPSSDYDMDEIDIQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEVSEKAEEALKAEKRKLQREAREALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415112;
- 90% Identity
- iTF_01480117;
- 80% Identity
- -