Tmad011629.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- lrrfip2
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000019.1:10895785-10902177[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-117 3.5e-113 377.8 31.4 1 300 44 340 44 340 0.97 2 2 0.0061 1.1e+02 1.9 4.4 120 171 338 389 337 400 0.86
Sequence Information
- Coding Sequence
- ATGAGCACCCATTCGGTCCAAATCGATGGGGTAACGAAATCGGAAACTTCGACCGATAACGAGGGGCCGAGAATTCAAACGGATTCTAACAATGTCATCCACGAATTAATGCAAAGTTGCAGCAATGAAGCGGAGGCACGTTTGTGGGCCAAGAGACAGGCCAGAGCTGAAGCTAGAGAGATACGTATGCGCGAACTGGAGAGGCAACAGAAAGAACAAGAAGAAAATGCCGATCGACAATTTGATATGTTGGCAGAACCGATGGCTAGGACGGCAAGGACGGCCACTGCTGGGAGCAGATATCTCTCCAGCAGGAGGAGTTCCGAGGACTCGCTGGAGGACGGCGGCAGTCTCAGGGATTTGCGGAATGAACTAAAGGAGTTTGAGGAGAAATTCCGCAAGGCGATGATCGCCAACGCCCAACTGGATAACGACAAAACGTCTCTCACATATCAACTGGAATTGCTTAAAGATAGGTTAGAAGAATTAGAAGAGGAGCATTCGCAGTTGAAGCGAGAGCACCGCGAAAAGTGCCGCGATTTCGACCAATTAAAACGGTTGTGCGCAAAATTAAAAGATGATTTGGCTGTGACTAGAGCTGAACTAGAAGAAAGAGATCAGTTGATAAACGAGAAAGGTTTAGTCATCGTCGGCGAGGATTCGATCAATGAAGAAGAACAAAGGAACGGCGATATCAGTCTTAGTAGTATAGGTACACCGAAAAAGGCTTTAGTTAGTGTAGAAAATGCCCAGTTGTTGGAAAGCGCAGGAGAAGGAAGTCTAGATGTGCGATTAGCGAAATTGATGAAAGAAAAAGGTGAATTTTTGGATCAAATTAGCCATTTAAAATTAGAATTAGAAGAGGAACGAAGTAAGCGGAAAAAATCGAATGCGGGCGGGACGTTGAACGGGCCGTCATCAGATCACGACTTAGACGAAATAGATATACAAAGGGAAYCGAGTAAACAACTCGGCGATTACAAATTTCGAGCTCAAAAAGCCGAACAAGACGTCGCCACGTTACAGGCGACTGTCGCAAGGCTTGAAAGTCAAGTTATTAGGTATAAGGCTGCGGCCGAAGTCTCGGAAAAGGCCGAAGAGGCCCTAAAGGCCGAAAAACGGAAATTGCAAAGAGAGGCACGAGAAGCACAAAGTCGAGCTGAGGAATTGGAAACATCAAATACACACTTACTGAAACGTTTAGACAAATTGAAGAATGCGAAATCGGCATTATTGAAAGAACTTTGA
- Protein Sequence
- MSTHSVQIDGVTKSETSTDNEGPRIQTDSNNVIHELMQSCSNEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPMARTARTATAGSRYLSSRRSSEDSLEDGGSLRDLRNELKEFEEKFRKAMIANAQLDNDKTSLTYQLELLKDRLEELEEEHSQLKREHREKCRDFDQLKRLCAKLKDDLAVTRAELEERDQLINEKGLVIVGEDSINEEEQRNGDISLSSIGTPKKALVSVENAQLLESAGEGSLDVRLAKLMKEKGEFLDQISHLKLELEEERSKRKKSNAGGTLNGPSSDHDLDEIDIQREXSKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEVSEKAEEALKAEKRKLQREAREAQSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415112;
- 90% Identity
- iTF_01480117;
- 80% Identity
- -