Tcas007872.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- Trerf1_1
- Assembly
- GCA_000002335.3
- Location
- NC:6132154-6299456[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-12 5.6e-09 35.5 0.1 2 46 1224 1268 1223 1268 0.96
Sequence Information
- Coding Sequence
- ATGACAGCTGTCAATGCGGGTGTCCACGAGCTGGCCGGCGTCCGCTTGCCCCTCCAGCCGTACTCTGGTGGTCATGCGGTGTTTATGTATAGCACAGCCGCCGACGGCAACGTCACCCTCCAACTCAAAGAATCGGACGATTTGGATCGGTCGAGTCTTGCTGCGATGCTGGCCAGGCTGCAGGACGACGCAACTTTTTCCATATCGTACCAAGACACGGATATCCTTTCCGACGGCAGCATCGACGTGCTTTTGGGTACCGGGACGGCGAATTCAGGCGGGAACGAAGCTGTTACAGCCACCTTCGACCTGTTCGACTCGTCGAGTGGCCCGGACCTGACTTTGTCCCCGCAGACGTTCACGAACTCAGCTGAGGCCTTTATCAACGACAACTCCAACAGTCTGGGAGTCCCAGCGGACAGCGATGCAGTAACGACAACAACAGATGAGAAGAAGACCACGAACAACAACTCGTCGGAAGTGGTGAAACTGACGGTGAAAAGGGCGCGTCCGAAAGCAGCATCGCCCAACAGACAGGGTCCCCAACAGTGCCAGGTATGTGCCAAAGTGTTTGGGAACGCGTCCGCTTTGGCTAAACACAAGTTGACCCACAGTGACGAAAGGAAGTACGTCTGTACCATGTGTGGGAAAGCGTTCAAGCGCCAGGACCATCTCAACGGTCACATGTTGACGCACCGCAACAAGAAACCGTACGAGTGCAAGGCTGAAGGCTGTGGCAAAAGTTACTGTGATGCTAGGTCTTTGCGGAGACACACGGAAAACCACCACAGCTCGTCGACGGTTAACACGGCGACGACGACCATGTCGCCAGCACAGGGGGCGGCATCGGGGGATGCCGCCTCACCGCATGGTTCCAGCTGTATACAGTACGCGCCGCCACCAACCTCCACCACCAATGGAAAGAGTCAGCTGCAGCAGCTCCTGGCCACGGAGCCGGCAAAGGGCGGCAGTGGCGGCAACAACGATGGGCTAACCAAACAACAACTGGATCTAATACATCAAATAATGGAACAAACCCAGAGACAATCCCAATCCGCCAGTAAACCGACAACAAAGCCGGCCACAAAACCCATTAGCAAAACACCAGTCAAAGTACAGAGGGTGTGGACGTCGACGACGCAGCAGACTTCATCAAACAAAACAAGTGGGAGCGCTACGAGTCCGCAGGCAAAAGTTACCACCACCACCCCGTCGACATCCCCAGCCGCCACCGCCACCCCCAACAAACCCGAACCCAAACCCGTCGAATGCAACCTATGTCACAGGAAATTCAAGAACATCCCCGCCCTCAATGGACACATGCGGCTGCACGGCGGATACTTCAAAAAGGACGCGGAGAACAAGAAGTGCGAAAAAAAAGACACCAACGGCCCCCCTTTACAGACGGCCAGTGTGAGCGTTCGGGCCCTCATTGAAGAGAAAATCATCAACAAGCGGATAACAAATCCCCAAACGACGACGACATCGTCGGCGTCCTCGGCGTCGAGTGAAGAGAGTCAGAAATCGACGGCTCCGCCTTTGTTCCCATTAACTGTGCATTCCTCTGCGAACAACTCCAGCGATCTGGACACTAAAATAACCTCTTTCGTCGTGCCGGCGCCACCCCAGCAGCCGGTGGAGAAAGCGCGAAGACATTCCGATGCCGAAGCCTTCAACGTGTCCAGAACTACGACCACCACCCAACAGAAAGCTGAAGCTCTGGCAGATCTCATCCTCAAACGAGACAAAGTCTCCGTCAAACGTACTACCTCTGACCCCGGACAATCCTCACAGATCATCCAGTTTCAATCGGCCGACTCTTTTACGCTAACGGGAGTTACGTATCAGTCGGAAGATGGTGAATACCTTTCGCCGAGTCTGCAAGACGAGGTGTTCACGCAAGTGCAGGACACGATGCTCTTGCAAGGAGTCGATCCGCACCAGCTGGCGTCCATCCAGTTCCAAACGGACACGCTTCTGCAGGACCAGAACGACCAGCAACTCCAAGACATCGCTTTGGAGGACTACACAAATCTGCAAGAAGCCGTAGTCCAGTCACCTTCCTACCAGTCGAGCCATTCGGTGAACCAGGAGCTGCAAGCTGTGCTAGACTCGCCTCTTCCTGAGAGCTTAGCAGAGTTCAGCACCTTTCACTCGACCACAAATCTAGATATACCATCTCCAGGCTACCAGACGCAATCTCCAGCTCAATTCACCGGCTCTCCACACACCTCTCTAACCGCACAATCACCGCTACAAAGTCCCTTGATCAGGCATGATTCTCCAGGATTCGCATATCCCACTCCTCCTGCGAGTCACGAAGGACAGAGTCCTTGTTTCGGCCAAAACACCCTTCTTCCAATGGTATCGCCAAAGCAGAACGAGTTTGGTCAAGTAGTGGAGAGAGGTGTGGATGAACCTCCGCAAGCTTCGTCGCCCTTATCTGCGGCGTTTTTCACGTCGACGATGTCAAGTTCGGCCGCTGTCGAGGAAGCTTTGGAGGAAGTCCTCCCAGGGGAGAGTATTCCAACGGATGATATTTACCCTTTAACGAATTCACCCCCTCCACAATCTCCCTTATCGGTGGGCCTTACACCTGTTCCCTCGCCCTTATCAAATATTGTGACAACGTCTGTGCCCTCACCCCACACTTCCACCACGTTCACTCCCTCGCCTAACACCGTCACCTTCCCTATGTCTCCTCATTACACCCTCCAATCCCAAATGATGCCCAATTCAGAAGACCCTCTCCTGTCAAGTAGCCCAAAAGACTTTGCCCCTCGCAAAAAGTTCGAGTTCAACGGAGTTCCTCTAAGAGTGATCAGCAATAACGGCCTGCTGGATCTCAACAGTTCGAACTTCGCCGGCATATTAGTTGATGCCAACGGCGAAATCAAGATCATCCAAACTGGGGGAAACACCTTCCAAGCCAAAAACTTCCTCGTTGCCAACACTTCCCTTATCCAAAGCCAAGACGACGAGAAAAACGCCCCAAAAACGCACAAGGTGCTCAGAATTCCAACGAAGCAAATCATCGCAAGGCCTAAACAGATAATCGACTTGAAAAGAGAAGAGAACAACGATGTGTTTCTCAGCCCTACAACGATACCCGCGAGTCCTATACGGGCTTCCAGGAAACGGCCTCGAAGCGAGCCGCTCCAACTTCCGGTTTTTCACCAATCGAAGTTGAGGGCGACGAGGAGTAAGCCCCAGGGGTTCGCTCCGTACACGCCTCAGCCTATTTTAAACCCCCAAAGGCCCGGAACGGGTCTATACGCGAATATTAAGGTGAAATCGGAAGAAGACTCGAGCTGGAGCAATGACCCCATCCCCGAGAGCGACTCCACGCCGCACGTAAATGTGGGCTCTCAATTTCAATGCACAATACCTCCTTTTACGTCCGCTCCGTGTAGGACCAATCCGGACCCAACGCATGAGGATCTCCTGTGGGATCCTGGCATAAGCGGCTGCACAGACAGTGAAGTTGACATGTACTTGGATTTCGCGTGCTGCGCTGCAGTTCCCGGGGGAGGAAGGAATAAGGAGTACGCCATGCACCTCCTGCATATGTGTGGCGGAAACATACACGACGCGATGTTGAAGCTGATGCAACCCGCGCCGATTCTCCCGTCGGACCACCCACTCCTTTGTTATCAGTACAGCGAGAGTGACAAATGGACGTCTTCTGAAACAGACATTTTCCACAATGCGTTGCTGAAATACGACAAGGATTTCCGCAGCATAGCTCAAGAGATCGGGACGAAGACTATCAAACAGTGTGTACAGTTCTACTACGTGTGGAAGAAAGTGTGTGTTGATGAATACCGAAAGCTGAAGTATCTCCGGGAGCGGCGACAGAGTCACTCGAAGAGTATAGAAGGGGACGTAGAAGAGAAGCCGTATCCTGATGCCAAATTATTAGGGATTGTAGATAGTGGTTCTCCCATGCCTGTTCAAGAGACCAGAAGTTTTATCTGCGAGTTCGCAGACTGTTCAGCTAGTTTTAATTCGCGTGCCGCCCTTAACGGGCACATACGAATTCACGGTGGAACGGCCCGGAATTCTCCGACACCGTCTGCAAACGCAGACAAGCGTACTTCCTCCGTAAGTTCAACCGTTTGTCATCCCGACTCAACAGAAGATTACCCCTGTAAGATTTGCGGGAAGTAA
- Protein Sequence
- MTAVNAGVHELAGVRLPLQPYSGGHAVFMYSTAADGNVTLQLKESDDLDRSSLAAMLARLQDDATFSISYQDTDILSDGSIDVLLGTGTANSGGNEAVTATFDLFDSSSGPDLTLSPQTFTNSAEAFINDNSNSLGVPADSDAVTTTTDEKKTTNNNSSEVVKLTVKRARPKAASPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSSTVNTATTTMSPAQGAASGDAASPHGSSCIQYAPPPTSTTNGKSQLQQLLATEPAKGGSGGNNDGLTKQQLDLIHQIMEQTQRQSQSASKPTTKPATKPISKTPVKVQRVWTSTTQQTSSNKTSGSATSPQAKVTTTTPSTSPAATATPNKPEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKCEKKDTNGPPLQTASVSVRALIEEKIINKRITNPQTTTTSSASSASSEESQKSTAPPLFPLTVHSSANNSSDLDTKITSFVVPAPPQQPVEKARRHSDAEAFNVSRTTTTTQQKAEALADLILKRDKVSVKRTTSDPGQSSQIIQFQSADSFTLTGVTYQSEDGEYLSPSLQDEVFTQVQDTMLLQGVDPHQLASIQFQTDTLLQDQNDQQLQDIALEDYTNLQEAVVQSPSYQSSHSVNQELQAVLDSPLPESLAEFSTFHSTTNLDIPSPGYQTQSPAQFTGSPHTSLTAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPCFGQNTLLPMVSPKQNEFGQVVERGVDEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGESIPTDDIYPLTNSPPPQSPLSVGLTPVPSPLSNIVTTSVPSPHTSTTFTPSPNTVTFPMSPHYTLQSQMMPNSEDPLLSSSPKDFAPRKKFEFNGVPLRVISNNGLLDLNSSNFAGILVDANGEIKIIQTGGNTFQAKNFLVANTSLIQSQDDEKNAPKTHKVLRIPTKQIIARPKQIIDLKREENNDVFLSPTTIPASPIRASRKRPRSEPLQLPVFHQSKLRATRSKPQGFAPYTPQPILNPQRPGTGLYANIKVKSEEDSSWSNDPIPESDSTPHVNVGSQFQCTIPPFTSAPCRTNPDPTHEDLLWDPGISGCTDSEVDMYLDFACCAAVPGGGRNKEYAMHLLHMCGGNIHDAMLKLMQPAPILPSDHPLLCYQYSESDKWTSSETDIFHNALLKYDKDFRSIAQEIGTKTIKQCVQFYYVWKKVCVDEYRKLKYLRERRQSHSKSIEGDVEEKPYPDAKLLGIVDSGSPMPVQETRSFICEFADCSASFNSRAALNGHIRIHGGTARNSPTPSANADKRTSSVSSTVCHPDSTEDYPCKICGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480413; iTF_01480808; iTF_01481196; iTF_00929506; iTF_00929862; iTF_00987063; iTF_00987386; iTF_01566176; iTF_01566518; iTF_01311490; iTF_01311788; iTF_00415402; iTF_00415003; iTF_00753293; iTF_00752896; iTF_00870507; iTF_00870854; iTF_01330094; iTF_01329736; iTF_00813650; iTF_00813922; iTF_00646931; iTF_00647534; iTF_01163476; iTF_01163064; iTF_00639477; iTF_00639802; iTF_01278486; iTF_01277829; iTF_01366263; iTF_01366591; iTF_01410263; iTF_01409931; iTF_01283321; iTF_01283728;
- 90% Identity
- iTF_01410263;
- 80% Identity
- iTF_01480413;