Basic Information

Insect: Tenebrio molitor
Gene Symbol: TRERF1
Assembly: GCA_963966145.1
Location: OZ014539.1:2087676-2107198[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00029 0.025 15.6 0.1 2 23 106 127 105 127 0.97

2 6 7.9e-08 6.7e-06 26.9 1.4 1 23 133 155 133 155 0.99

3 6 0.0001 0.0087 17.1 2.6 1 23 161 185 161 186 0.95

4 6 0.00055 0.047 14.8 0.8 2 23 345 366 344 366 0.97

5 6 0.0017 0.15 13.2 0.0 1 23 1235 1259 1235 1259 0.97

6 6 3.5e-05 0.0029 18.5 0.7 1 23 1293 1315 1293 1315 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00029	0.025	15.6	0.1	2	23	106	127	105	127	0.97
2	6	7.9e-08	6.7e-06	26.9	1.4	1	23	133	155	133	155	0.99
3	6	0.0001	0.0087	17.1	2.6	1	23	161	185	161	186	0.95
4	6	0.00055	0.047	14.8	0.8	2	23	345	366	344	366	0.97
5	6	0.0017	0.15	13.2	0.0	1	23	1235	1259	1235	1259	0.97
6	6	3.5e-05	0.0029	18.5	0.7	1	23	1293	1315	1293	1315	0.98

Sequence Information

Coding Sequence: ATGAGCCGTCCTTCTTGGAAATCTCACAGGAAATCGTGCATTTCAGGTGGGAACGAGGCCGTCACAGCCACCTTCGACCTGTTCGACTCGTCGAGTGGCCCGGACCTGACTCTCTCCCCGCAGACCTTCACGAATTCAGCCGAGGCCTTCATCAACGACAACTCCAACAGCCTGGGAGTCCCGGCGGACGGCGATGCAGTGACAACGACGACGGACGAGAAGAAGGCCTCGAACAACAACGCCTCGGAGGTGGTGAAGCTGACGGTGAAGAGGGCGCGGCCGAAGGCGGCGTCGCCGAACCGACAGGGCCCCCAGCAGTGCCAGGTATGTGCCAAAGTGTTTGGGAACGCGTCGGCTCTGGCGAAGCACAAGCTGACCCACAGCGACGAAAGGAAGTACGTGTGCACCATGTGCGGGAAGGCGTTCAAGCGGCAGGACCATCTGAACGGCCACATGCTGACGCACCGCAACAAGAAGCCGTACGAGTGCAAGGCCGAGGGCTGCGGCAAGAGCTACTGCGACGCCAGGTCGCTGCGGAGGCACACCGAGAACCACCACAGCTCGTCGACGGTGAACGCGGCGACGACGACGATGTCGCCGGCGCAGGGGGCGGCCTCGGGGGACGCGGCCTCGCCCCACGGCTCCAGCTGCATACAGTACGCGCCGCCGCCGACATCCACCACCGGCGGGAAGAGCCAGCTGCAGCAGCTGTTGGCCACCGAGCCGGCCAAGGGCGGCAGCGGCGGCAACAACGATGGGCTAACCAAACAACAACTGGATCTAATACATCAAATAATGGAACAAACCCAGAGACAATCCCAATCCGCCAGCAAACCGACAACAAAGCCGGCCGCAAAACCCATTAACAAAACACCAGTCAAAGTGCAGAGGGTGTGGACGTCGACGACGCAGCAGACTTCGTCAAACAAAACAAGTGGAAGCGCTACGAGTCCGCAGGCGAAAGTTACCACCACCACCCCGTCGACGTCCCCGGCCGCCGCCGCCCCCAACAAACCCGAGCCCAAGCCCGTCGAGTGCAACCTATGTCACAGGAAATTCAAGAACATACCGGCCCTCAACGGCCACATGCGCCTCCACGGGGGCTACTTCAAGAAGGATGCGGAGAACAAGAAGTGCGAGAAGAAGGACGCGAACGGACCGCCGCTGCAGACGGCGAGCGTGAGCGTGCGGGCCCTCATCGAGGAGAAGATAATCAACAAGCGCATCACGAACCCCCAACCGACGGCGTCGTCGGAGGACAGCCAGAAGACGACGGCGCCGCCGCTGTTCCCGCTAACTGTGCATTCCTCGGCGGGCAACTCGAGCGACCTGGACGCGAAGATGACCTCGTTCGTGGTGCCGGCGCCGCCCCAGCAGACGGCGGAGAAAGCACGAAGACATTCCGACGCCGAGGCCTTCACCGTGTCCAGAACGTCGACGACCCAGCAGAAAGCCGAGGCCCTGGCAGATCTCATCCTGAAGAGGGACAAAGTCTCCGTCAAACGTACTACCTCCGATCCCGGACAATCCTCCCAGATCATCCAGTTCCAGTCGGCGGACTCGTTCACCCTGACCGGGGTGGCCTACCAGTCGGAGGACGGCGAGTACCTCTCGCCCAGTCTGCAAGACGAGGTGTTCACGCAGGTCCAGGACACGATGCTGCTCCAGGGGGTCGACCCCCACCAGCTGGCCTCCATACAGTTCCAGACCGACACGCTGCTCCAGGACCAGAACGACCAGCAGCTGCAGGACATCGCGCTCGAGGACTACGCGAACCTGCAGGAGGCGGTGGTGCAGTCGCCGTCGTACCAGTCGAGCCACTCGGTCAACCAGGAGTTGCAAGCGGTGCTGGACTCGCCGCTTCCGGAGAGTCTCGCAGAGTTCAGCACGTTTCACTCCACCACCAACCTGGACATACCCTCGCCGGGGTACCAGACGCAGTCGCCGGCGCAGTTCACCGGGTCCCCTCGTACCTCGCTCACGGCGCAGTCGCCCCTACAGAGTCCGCTGATCCGGCACGACTCCCCGGGGTTCGCGTATCCGACTCCTCCGGCAAGCCACGAAGGACAGAGTCCCTGCTTCGGCCAGAACACTCTCCTCCCGATGGTCTCCCCCAAGCAGAACGAGTTCGGACAGGTCGTGGAGAGGGGAGTCGACGAACCCCCCCAAGCTTCGTCTCCTCTGTCGGCGGCGTTCTTCACCTCGACGATGTCGAGCTCCGCCGCCGTCGAAGAAGCCCTCGAGGAAGTCCTCCCGGGGGAGAGCATCCCGACTGACGACATTTACCCCCTCACGAACTCGCCTCCACCTCGATCACCTCTTTCGGTCGGTCTGACTCCAGTACCTTCCCCGCTCTCCAATATCGTGACGACTTCCGTATCTTCGCCTCATCCTTCGACCACCTTCGCTCCTTCCCCCAACACGGTGACGTTCCCGATGTCGCCCCACTACACGCTCCAGTCGCAGATGATGCCCAACTCGGAGGACCCGCTGCTGTCGAGCAGCCCCAAAGACTTCGCCGCTCGGAAAAAGTTCGAGTTCAACGGCGTCCCCTTGAGGGTGATAAGCAACAACGGCCTCCTAGACCTGAACAGTTCAAACTTCGCCGGCATCTTGGTCGACGCCAACGGCGAGATCAAGTTCATCCAGACCGGGGGCAACTTCCAAGCCAAGAACTTCCTCCTGGCCAACACTTCGCTGGCCCCCGCTCAAGAAGACGACAAGCAGAAACTCCAAAAGGTGCTCAAGATTCCAACGAAGCAGATCATCGCCCGGCCTAAGCAGATAATCGACCTGAAGAGAGAAGAGAACAACGACGTTTTCCTCAGCCCCACAACGATCCCGGCGAGTCCGGTCCGGACCTCCAGGAAACGGCCCCGGAGCGAGCCCCTCCAGCTCCCCGTCTTCCACCAGTCGAAGCTGAGGGCGACGAGGAGCAAACCCCAAGGCTTCGCCCCGTACACGCCGCAGCCGATCCTGAACCCCCAGAGGCCGGGCACGGGCCTCTACGCCAACATCAAGATCAAGACAGAGGAGGAGTCGAACTGGAGCAGCGACCCCATCCCGGAGAGCGACTCTACGCCACACGTGAACGTGGGGGCCCAGTTCCAGTGCGCGGTGCCCCCTTTTACGTCCGCTCCTAACAGGACTAATCCGGAGCCGACCTACGAGGACCTCTTGTGGGATCCCGGCATAAACGGGTGCACCGACATTGAAGTTGACATGTACTTGGATTTCGCGTGCTGCGCTGCAGTTCCCGGTGGAGGGAGGAACAAGGAGTACGCCATGCACCTCTTGCACCTGTGCGGCGGCAACATTCACGACGCGATGCTCAAGCTGATGCAGCCCGCGCCGATCCTCCCGTCGGACCACCCCCTCCTCTGCTACCAGTACAGCGAGAGCGACAAGTGGACGTCCTCAGAAACCGACGTTTTCCACAAAGCCCTGCTCAAGCACGACAAGGACTTCTGCAGCATCGCCCGAGAGATCGGGACGAAGACCGTGAAGCAGTGCGTCCAGTTCTACTACGTGTGGAAGAAGGTGTGCGTCGACGAGTACCGCAAGCTGAAGTATCTGCGGGAGCGGCGGCACAACCACTCGAAGGGCGCGGAGTCGGACGCGGAGGAGAAGCCGTATCCCGACGCCAAGCTGCTGGGGATTGTAGATAGCGGTTCTCCCATGCCCGTCCAGGAGACGAGGAGTTTCATTTGCGAGTTCGCAGACTGCTCAGCCAGTTTTAACTCGCGCGCCGCCCTCAACGGGCACATACGAATCCACGGGGGCACCGCCAGGAACTCTCCCACGCCGTCTGCGAACGCAGACAAGCGCACCACCTCCGTTACTTCGACAGTATGTCATCCCGACTCGACAGAAGATTACCCCTGTAAGATCTGCGGGAAAGTCTTTACAAAGATCAAGAGCCGGAGCGCCCACATGAAGTCGCATCGACCACCCGATGCGGAGCCCGTAAAACGCAGAGAAAAAGAAGCGCACCATTCGTGTACAAGCTTTGAACTTTCCGTGCCAAGCCCGTACAACACTTAG
Protein Sequence: MSRPSWKSHRKSCISGGNEAVTATFDLFDSSSGPDLTLSPQTFTNSAEAFINDNSNSLGVPADGDAVTTTTDEKKASNNNASEVVKLTVKRARPKAASPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSSTVNAATTTMSPAQGAASGDAASPHGSSCIQYAPPPTSTTGGKSQLQQLLATEPAKGGSGGNNDGLTKQQLDLIHQIMEQTQRQSQSASKPTTKPAAKPINKTPVKVQRVWTSTTQQTSSNKTSGSATSPQAKVTTTTPSTSPAAAAPNKPEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKCEKKDANGPPLQTASVSVRALIEEKIINKRITNPQPTASSEDSQKTTAPPLFPLTVHSSAGNSSDLDAKMTSFVVPAPPQQTAEKARRHSDAEAFTVSRTSTTQQKAEALADLILKRDKVSVKRTTSDPGQSSQIIQFQSADSFTLTGVAYQSEDGEYLSPSLQDEVFTQVQDTMLLQGVDPHQLASIQFQTDTLLQDQNDQQLQDIALEDYANLQEAVVQSPSYQSSHSVNQELQAVLDSPLPESLAEFSTFHSTTNLDIPSPGYQTQSPAQFTGSPRTSLTAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPCFGQNTLLPMVSPKQNEFGQVVERGVDEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGESIPTDDIYPLTNSPPPRSPLSVGLTPVPSPLSNIVTTSVSSPHPSTTFAPSPNTVTFPMSPHYTLQSQMMPNSEDPLLSSSPKDFAARKKFEFNGVPLRVISNNGLLDLNSSNFAGILVDANGEIKFIQTGGNFQAKNFLLANTSLAPAQEDDKQKLQKVLKIPTKQIIARPKQIIDLKREENNDVFLSPTTIPASPVRTSRKRPRSEPLQLPVFHQSKLRATRSKPQGFAPYTPQPILNPQRPGTGLYANIKIKTEEESNWSSDPIPESDSTPHVNVGAQFQCAVPPFTSAPNRTNPEPTYEDLLWDPGINGCTDIEVDMYLDFACCAAVPGGGRNKEYAMHLLHLCGGNIHDAMLKLMQPAPILPSDHPLLCYQYSESDKWTSSETDVFHKALLKHDKDFCSIAREIGTKTVKQCVQFYYVWKKVCVDEYRKLKYLRERRHNHSKGAESDAEEKPYPDAKLLGIVDSGSPMPVQETRSFICEFADCSASFNSRAALNGHIRIHGGTARNSPTPSANADKRTTSVTSTVCHPDSTEDYPCKICGKVFTKIKSRSAHMKSHRPPDAEPVKRREKEAHHSCTSFELSVPSPYNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01480056;
90% Identity: iTF_01409931; iTF_00870507; iTF_00870854; iTF_01481196; iTF_01480808; iTF_00415003; iTF_00415402; iTF_01480413; iTF_01480056; iTF_00752896; iTF_00753293;
80% Identity: iTF_01409931;