Basic Information

Insect: Eledona agricola
Gene Symbol: TRERF1
Assembly: GCA_964023215.1
Location: OZ026856.1:2692685-2745795[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00025 0.023 15.5 0.1 2 23 230 251 229 251 0.97

2 6 6.6e-08 6e-06 26.7 1.4 1 23 257 279 257 279 0.99

3 6 8.6e-05 0.0078 16.9 2.6 1 23 285 309 285 310 0.95

4 6 0.00037 0.034 14.9 0.3 2 23 472 493 471 493 0.97

5 6 0.0014 0.13 13.1 0.0 1 23 1352 1376 1352 1376 0.97

6 6 2.9e-05 0.0027 18.4 0.7 1 23 1410 1432 1410 1432 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00025	0.023	15.5	0.1	2	23	230	251	229	251	0.97
2	6	6.6e-08	6e-06	26.7	1.4	1	23	257	279	257	279	0.99
3	6	8.6e-05	0.0078	16.9	2.6	1	23	285	309	285	310	0.95
4	6	0.00037	0.034	14.9	0.3	2	23	472	493	471	493	0.97
5	6	0.0014	0.13	13.1	0.0	1	23	1352	1376	1352	1376	0.97
6	6	2.9e-05	0.0027	18.4	0.7	1	23	1410	1432	1410	1432	0.98

Sequence Information

Coding Sequence: ATGAAATTGTGCCGGGACGCGGGATTAGGGGAGAAGAAGCACTCCGGATATAATTATTTGACGGAAAATATGAGTTTACTTGAAATAATCTTCCTCTGGGAGATTTTACAAACGTTCGGCAAAGTCTTAAACGACTACGAAATTATCCCAATTACGTTGCCTCTCCTTTTCGCGTATGGGGTCCATGAATTGCGTCTACCTCTACATGCTCTTAGTGCGATTAAGGCGGTGGTGATGTTCGGCGCTCTGAAGGACGACCACGTCGCCCTCGAACTCAAAGAAACCGAAAATTTGGACAAGGCGAGTTTTGTGGCGATGCTGGCGCAGTTGCAAGAGGACGCCACTGTTTCCATATCATATCAGGACACGGACATTCTCCCGGACAGCATTGACGTGCTCTTGGCGACCGGCACTGCAAATTCAGGTGGGAACGACACGGTTACAGCCACCTTCGACTTGTTCGACTCGTCGAGCGGTCCGGACCTGACTCTGTCCCCACAGACCTTCACAAACTCAGCGGAGGCCTTCATCAACGACAACTCCAACAGTCTGGGAGTCCCGGCGGACAGCGATGCAGTAACAACAACGACCGACGAGAAGAAGGCCTCGAGCACTTCGGAGGTGGTGAAGCTGACGGTGAAGAGGGCGCGACCGAAGGCGGCGTCGCCGAACCGACAAGGACCCCAGCAGTGCCAGGTATGTGCCAAAGTGTTTGGGAACGCGTCCGCTTTGGCTAAGCACAAACTGACCCACAGCGACGAACGTAAATACGTCTGTACCATGTGTGGGAAAGCGTTCAAGCGGCAGGACCATTTGAACGGTCACATGTTGACGCATCGCAACAAGAAACCCTACGAATGCAAAGCGGAAGGCTGTGGCAAAAGTTACTGTGATGCTAGATCGTTGCGGAGGCACACGGAGAATCATCATAGCTCGACGACGGTGAACGCGGCGACGACGACCATGTCGCCGGCTCAAGGGGCGGCTTCTGGAGATGCGGCGTCGCCACACGGTTCGAGCTGCATTCAGTACGCACCACCACCTACCTCCTCAACCGGCGGCAAGAGCCAACTCCAGCAGCTGTTGGCCACCGAGCCGGCCAAGGGAGGCGGCAGCGGCAGCAACGATGGTCTAACCAAACAACAACTGGATCTAATACATCAAATAATGGAACAAACCCAGAGACAATCCCAATCCGCCAGCAAACCGACAACAAAGCCGGCCACAAAGCCCATTAACAAAACACCAGTCAAAGTGCAGAGGGTGTGGACGTCGACGACGACGCAGCAGAGTTCATCAAACAAAACAAATGGAAGCGTTACGAGTCCGCAGGCGAAAGTTACCACGACCACCCCTTCGCCGTCCCCTGCGGCCAATGGAACCACCCCCAGCAAGCCCGAGTGCAAACCCGTCGAGTGTAACATGTGTAAGCGGAAATTCAAGAACATCCCGGCCCTCAACGGACACATGCGACTCCACGGGGGTTACTTCAAAAAGCAAGAAGCTGAGAAGAAGGCGGAGAGCAAGAGCGAGTCCTCGGGAAAGCCCGCTCAAACCGCCAGCAGTTCGGTCCGCGCCAGACTCGAAGAGACCATCAACAAGAGATTGATGAACCCACAGTCGTCGTCGCAGGCGTCGTCGACGTCGGACGACGTCCAGAAGTCGTCGGCGCCGCCACTCTTCCCCTTAACTGTGCATTCCTCCACCGGCTCCAACGACATGGACACGAAAATCACCTCGTTCGTCGTTCCTGCGCCCCCTCAACAAACGGCGGAGAAAGCACGAAGACATTCCGACGCCGAGGCTTTCAGCGTGGCGAGAGTTTCCAGCACGCAGCAAAAAGCGGAAGCTCTCGCTGATCTCATCATAAAACGAGAAAAAGTCTCCGTCAAACGTACTACCTCTGATCCCGGACAATCCTCACAAATCATACAATTTCAGTCGGCGGATTCCTTCACGCTGACTTACCAATCTGAAGACGGCGAGTACCTCGCGCCCAGCTTGCAGGACGAGGTATTCACTCAAGTGCAAGACACCATGCTTCTTCAAGGCGTCGATCCGCACCATCTCGCCTCGATCCAGTTCCAAACGGACACGCTGCTGCAGGATCAAAACGACCAGCAGCTTCAAGACATCACCTTGGACGACTACACGAACCTTCCAGAGACCGTGGTGCAGTCGCCCTCGTTCCAAACAACTCATTCGGTCAATCAGGAGCTGCAAGCTGTGTTAAATTCGCCGCTGCCTGAAAGTCTAGCCGAGTTCAGCACGTTCCATTCGGCGAACAATTTGGACATACCATCTCCGGGATACCAAACGCAGTCTCCGGCGCAGTTCACTAGCTCACCACACACTTCCCTCACAGCTCAATCGCCTTTGCAGAGTCCTTTGATTCGACACGACTCGCCGGGATTTGCCTATCCGACGCCTCCGGCCAGCCACGAAGGACAAAGTCCTTGCTTCGGTCAGAATACTTTATTACCACTGGTGTCCCCCAAGCAAGAGTTTGGACAAGTCGTAGAGCGGGGAGCAGACGAGCCGCCGGAATCCTCCTCGCCTCTATCGGCGGCGTTTTTCACCTCGACCATGTCCAGCTCCGCCGCTGTCGAGGAAGCTTTGGAAGAAGTACTCCCAGGGGAGAGTATAGCGACCGACGACATATATCCCCTCACAAACTCGCCCACGCCACAATCTCCGTTATCTGTGGGGCTGACTCCGGTGCCGTCGCCCTTATCGAACATTGTTACCACAACCGTACCATCGCCTCATCCTTCTGCTAATTTTACTGCCTCGCCTCACACGGTCACCTTCCCCATGTCTCCGCACTACACTCTTCAGTCGCAGATGATGCCCAATTCCGAAGACCCGCTGTTGTCGAGCAGCCCCAAGGACTTTGCCGCGCGCAAAAAGTTCGAATTCAACGGTATGCCTTTGCGCGTCATCAGCAGCAACGGTTTGCTCGACCTCAACAATCCAAACTTCACGGGAATCCTCGTGGACGGCAGCGGCGAAATCAAGCTGATCCACACCGGAGGCAACACTTTCCAAACGAAAAATTTCGTGCTCGCCAACGCGGCCTTCGTGCAAACGACACAAGACGACGACAAGAAGAAGGTGCTCAAGATTCCAACGAAGCAAATAATCGCAAGGCCTAAGCAGATAATCGATTTGAAGAGGGAAGAGAGCAACGATGTGTTTTTGAGTCCGACAACGATTCCGGCGAGTCCGGTGAAAGTCGCCAGAAAGCGGCCTAGAAGCGAACCGCTCCATCTCCCGGTTTTCCATCAGTCGAAGCTGAGGGCCACCAGGAGTAAACCCCAGGTGTTCGCGCCATACACTCCGCAGCCAATTTTGAATCCGCAAAGACCGGGGACCGGTTTATACGCAAACATCAAGCACAAATCAGAGGAAGAGTCAAGTTGGAGTAGCGAGCCAATCCCGGAAAGCGACTCCACGCCGCACATAAACGTGGGCCCCCAGTTCCAGTGCCACATCCCGGGATTCGTACCCACAATCAGCCCGGAACCTACGCGCGAAGATCTCTTGTGGGATCCCGGCATAAACGGCTGCACGGATCTTGAAGTTGACATGTACTTGGATTTCGCGTGCTGCGCTGCAGTTCCCGGGGGAGGGAGGAACAAGGAGTACGCCATGCACCTCTTGCATCTGTGCGGTGGCAACATTCATGAAGCGATGTTGAAGTTAATGCAACCAACACCGGCTCTCCCATCCGACCATCCCCTTCTGTGCTATCAGTACACCGAAAGCGAGAAGTGGACGTCTTTGGAGACGGACGCTTTCCACAGGGCGCTGTTGAAGCACGACAAAGATTTCCGCACTATTGCTCAAGAGGTTGGAACAAAGACTGTCAAGCAGTGTATACAGTTCTACTATGTTTGGAAGAAGGTGTGCATTGACGAGTACCGCAAGTTGAAGCTTCTCCGAGAGCGAAGACACAGCCATTCGGACGTCGAAGAAAAACATTTTCCAGATGCCAAACTCCTAGGGATTGTAGATAGCGGCTCTCCCATGCCAGTCCAAGACACAAGAAGTTTCATTTGCGAGTTCGCAGACTGCTCAGCTAGTTTTAATTCCCGCGCCGCTCTGAACGGGCACATCCGCATCCACGGCGGTACTGCCCGCAACTCACCGACACCGTCTGTTCACGCAGACAAGCGCACCACCTCCGTAAGTTCAACCGTATGTCATCCAGACTCAACCGAAGATTACCCTTGTAAGATCTGCGGGAAAGTGTTCACCAAGATCAAGAGCCGGAGTGCCCACATGAAATCGCATCGTCCACCCGATGCGGAGCCCCCGAAACGCAAAGAAAAAGAAGCGCATCCCTCGTGTACAAGCTTTGAACTTTCCGTGCCAAGTCCGTTTAGCACTTAG
Protein Sequence: MKLCRDAGLGEKKHSGYNYLTENMSLLEIIFLWEILQTFGKVLNDYEIIPITLPLLFAYGVHELRLPLHALSAIKAVVMFGALKDDHVALELKETENLDKASFVAMLAQLQEDATVSISYQDTDILPDSIDVLLATGTANSGGNDTVTATFDLFDSSSGPDLTLSPQTFTNSAEAFINDNSNSLGVPADSDAVTTTTDEKKASSTSEVVKLTVKRARPKAASPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSTTVNAATTTMSPAQGAASGDAASPHGSSCIQYAPPPTSSTGGKSQLQQLLATEPAKGGGSGSNDGLTKQQLDLIHQIMEQTQRQSQSASKPTTKPATKPINKTPVKVQRVWTSTTTQQSSSNKTNGSVTSPQAKVTTTTPSPSPAANGTTPSKPECKPVECNMCKRKFKNIPALNGHMRLHGGYFKKQEAEKKAESKSESSGKPAQTASSSVRARLEETINKRLMNPQSSSQASSTSDDVQKSSAPPLFPLTVHSSTGSNDMDTKITSFVVPAPPQQTAEKARRHSDAEAFSVARVSSTQQKAEALADLIIKREKVSVKRTTSDPGQSSQIIQFQSADSFTLTYQSEDGEYLAPSLQDEVFTQVQDTMLLQGVDPHHLASIQFQTDTLLQDQNDQQLQDITLDDYTNLPETVVQSPSFQTTHSVNQELQAVLNSPLPESLAEFSTFHSANNLDIPSPGYQTQSPAQFTSSPHTSLTAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPCFGQNTLLPLVSPKQEFGQVVERGADEPPESSSPLSAAFFTSTMSSSAAVEEALEEVLPGESIATDDIYPLTNSPTPQSPLSVGLTPVPSPLSNIVTTTVPSPHPSANFTASPHTVTFPMSPHYTLQSQMMPNSEDPLLSSSPKDFAARKKFEFNGMPLRVISSNGLLDLNNPNFTGILVDGSGEIKLIHTGGNTFQTKNFVLANAAFVQTTQDDDKKKVLKIPTKQIIARPKQIIDLKREESNDVFLSPTTIPASPVKVARKRPRSEPLHLPVFHQSKLRATRSKPQVFAPYTPQPILNPQRPGTGLYANIKHKSEEESSWSSEPIPESDSTPHINVGPQFQCHIPGFVPTISPEPTREDLLWDPGINGCTDLEVDMYLDFACCAAVPGGGRNKEYAMHLLHLCGGNIHEAMLKLMQPTPALPSDHPLLCYQYTESEKWTSLETDAFHRALLKHDKDFRTIAQEVGTKTVKQCIQFYYVWKKVCIDEYRKLKLLRERRHSHSDVEEKHFPDAKLLGIVDSGSPMPVQDTRSFICEFADCSASFNSRAALNGHIRIHGGTARNSPTPSVHADKRTTSVSSTVCHPDSTEDYPCKICGKVFTKIKSRSAHMKSHRPPDAEPPKRKEKEAHPSCTSFELSVPSPFST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01480056;
90% Identity: iTF_00639477;
80% Identity: iTF_00639477;