Gcor001751.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- Trerf1
- Assembly
- GCA_029298725.1
- Location
- CM055509.1:31161585-31176567[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00027 0.021 15.6 0.1 2 23 116 137 115 137 0.97 2 6 7.2e-08 5.7e-06 26.8 1.4 1 23 143 165 143 165 0.99 3 6 9.3e-05 0.0074 17.0 2.6 1 23 171 195 171 196 0.95 4 6 0.0005 0.04 14.7 0.8 2 23 356 377 355 377 0.97 5 6 0.0016 0.12 13.2 0.0 1 23 1251 1275 1251 1275 0.97 6 6 3.2e-05 0.0025 18.5 0.7 1 23 1309 1331 1309 1331 0.98
Sequence Information
- Coding Sequence
- atgctCCCATGGGAAACGAAAGAGGATGCAGATGTCTCCTCGCAAATAGCCCTGAAGCCCCATTCAAAGCGTGGGAACGAAGCCGTTACAGCCACCTTCGACCTGTTCGACTCGTCGAGTGGCCCGGACCTGACTCTGTCCCCGCAGACCTTCACGAATTCAGCTGAGGCCTTTATCAACGACAACTCCAACAGTCTGGGGGTCCCAGCGGACGCCGATGCAGTTACAACGACGACGGAGGATAAAAAGCCCGcaaacaacaacaacaattcTTCAGAAGTGGTGAAGCTCACCGTGAAGAGAGCTCGTCCGAAGGCGGCGTCCCCCAACCGCCAAGGCCCCCAGCAGTGCCAGGTATGTGCCAAAGTGTTTGGAAACGCCTCCGCCTTGGCCAAACACAAACTCACCCACAGCGACGAACGGAAGTACGTCTGTACCATGTGCGGGAAAGCGTTCAAGCGACAGGACCACCTGAACGGTCACATGTTGACCCATCGCAACAAGAAACCTTACGAGTGCAAAGCTGAAGGATGTGGCAAAAGTTACTGTGATGCTAGATCTCTGCGGCGACACACAGAAAACCATCACAGCTCGGCGACGGTCAACACCACCACGACGACGATGTCGCCGGCTCAAGGAGCGGCGTCGGGAGATGCGGCGTCGCCACACGGGTCAAGTTGTATACAATACGCGCCGCCTCCGACGTCAACCAGCAATGGGAAAAGTCAGCTGCAACAGCTACTGGCTACGGAGCCGGCAAAGAGCGGAAGTGGCGGCAACAACGATGGGTTAACCAAACAGCAACTGGATCTAATACATCAAATAATGGAACAAACCCAGAGACAATCCCAATCCGCCAGTAAACCGACAACAAAGCCAACCACAAAACCCATTAACAAAACACCAGTCAAAGTACAGAGAGTGTGGACGTCGACGACGCAGCAGACTTCATCAAACAAAACAAGTGGGAGCGCTACGAGTCCGCAGGCGAAAGTTACCACCACCACCCCATCAACGTCCCCGGCCGCCACAACCGCCCCCAACAAACCAGAACCCAAGCCCGTCGAATGCAACCTCTGTCACAGAAAATTCAAGAACATACCCGCCCTCAATGGGCACATGCGACTGCATGGGGGCTACTTCAAAAAGGACGCGGAAaacaaaaaatgcgaaaaaaaggaCGCCGGGGGCCCTCCGTTGCAAACCGCGAGCGTGAGCGTGCGCGCCCTCATCGAAgagaaaataataaacaaacgcATCACCAACCCCCAAACGTCGTCGGCGGCGTCTTCTTCGACAGAAGAGCCGCAGCAGAAATCGACGGCTCCGCCTTTGTTCCCCTTAACTGTGCATTCCTCTGCGAACAGCTCCAGCGACCTGGACACGAAAATCACCTCTTTCGTCGTACCGGCGCCTCCTCAACAGACGGCGGAGAAAGCACGAAGACATTCCGATGCCGAGGCATTCAACGTATCCAGGACTTCGACAACACAGCAAAAAGCAGAAGCTCTGGCAGATCTCATCCTGAAGAGAGACAAAGTCTCTGTTAAACGTACTACCTCTGATCCTGGACAATCCTCGCAGATCATACAGTTTCAATCGGCGGATTCCTTCACGTTAACGGGAGTTACGTATCAAGAAGATGGCGAGTACTTATCGCCGAGTTTGCAAGATGAAGTCTTCACGCAAGTGCAAGACACGATGCTGTTGCAAGGCGTGGATCCGCACCAGCTCGCGTCGATACAGTTCCAAACGGACACGTTGTTGCAGGATCAGAATGATCAGCAGCTGCAGGATATCGCGTTAGAGGACTACACTAATCTGCAGGAAGCGGTAGTGCAGAGTCCGTCGTACCAATCGGGACACTCTGTTAACCAAGAGCTGCAAGCGGTGTTGGATTCGCCGCTTCCAGAGAGTTTAGCGGAATTTAGCACGTTTCACTCGACGACAAATTTGGATATACCTTCTCCAGGTTACCAGACGCAGTCACCGGCGCAGTTCACCGGGTCTCCGCACACCTCCCTCACGGCGCAGTCACCTTTACAGAGTCCTCTCATCCGACATGACTCTCCAGGTTTCGCCTATCCAACACCTCCAGCAAGTCATGAAGGCCAAAGTCCGTGCTTCGCCCAAAGCACCCTCCTTCCCATGGTCTCTCCAAAGCAAAACGAGTTCGGACAAGTCGTGGAGCGCGGTGTTGACGAACCACCACAAGCTTCGAGTCCTTTATCTGCGGCTTTCTTTACATCCACGATGTCGAGCTCCGCCGCTGTTGAAGAGGCTCTAGAAGAGGTCCTTCCTGGAGAAAGCATTCCGACtgatgacatctatcctttgacGAATTCTCCTCCTCCTCAGTCACCTCTTTCGGTGGGGTTGACGCCTGTCCCGTCGCCACTTTCGAATATTGTGACAACTTCCCCGTCGCCGCACCCGTCAACTACGTTCACACCCTCCCCCAGTACCGTTACCTTCCCCATGTCTCCTCATTACACCCTTCAGTCGCAAATGATGCCCAACTCTGAAGACCCTTTACTATCGAGCAGTCCTAAAGACTTCGCTACGCGAAAGAAGTTCGAGTTCAACGGTGTTCCTCTTCGTGTCATCAGCAACAACGGACTTCTTGACCTTAACAGTTCCAACTTTGCCGGGATTCTAGTCGATGCTAATGGTGAGATAAAATTCATTCAGACTGGAGGAAACACCTTCCACGCTAAGAACTTCCTGTTGGCGAACACCCTGATTTCACAACAAGGGGATGAAAAGAACGCCGCCCAGAAACAACCAAAGGTGCTCAAAATTCCAACGAAACAAATCATTGCAAGGCCTAAGCAGATAAACGATTTGAAGAGAGAAGAAAACAACGACGTGTTTCTTAGTCCGACAACGATACCGGCAAGTCCTGTGAGGACGTCACGGAAACGGCCTAGAAGCGAACCGTTGCAGCTTCCAGTTTTGCACCAATCTAAGTTGAGGGCGACACGGAGTAAACCTCAGGGGTTTGCTCCTTACACACCCCAGCCGATTTTGAACCCCCAGAGACCCGGAACGGGGCTGTACGCCAACATCAAGATAAAAACAGAGGAAGAAACAAGTTGGAACACTGACCCCACGCCAGAGACGGACTCTACGCCCCACATCAACGTGGGTCCCCAGTTTCAATGCACGATACCTCCTTTTACGTCGGCTCCTAACAGGACGAATCCTGAGCCAACTTACGAGGACCTCCTCTGGGACCCCGGCATAAGCGGCTGCACAGACAGTGAAGTTGACATGTACTTGGATTTCGCGTGCTGCGCTGCAGTTCCCGGTGGAGGGAGGAACAAGGAGTACGCCATGCATCTCTTGCACATGTGTGGCGGAAACATACACGATGCGATGTTGAAGTTGATGCAACCCGCCCCCATCCTCCCTTCAGACCACCCTCTCTTGTGCTACCAGTACAACGAGAGCGACAAGTGGACGTCGACGGAAACTGACGTCTTCCATAAAGCGTTACTGAAGCACGACAAGGATTTCCGCAGCATTGCTCAAGAGATCGGGACGAAGAACGTCAAGCAGTGTATACAGTTCTATTACGTTTGGAAGAAGGTGTGTCTCGACGAGTACCGGAAGCTCAAGTACCTGCGAGAGCGGAGACACAACCATAAAGGTGCAGAGTCGGACGTGGAGGAGAAACCGTATCCTGATGCCAAACTTTTAGGGATTGTAGATAGTGGTTCCCCAATGCCTGTCCCGGAGACAAGGAGTTTTATATGCGAATTCGCAGACTGCTCAGCTAGTTTTAACTCTCGCGCCGCCCTCAACGGGCACATACGAATCCACGGCGGTACCGCCAGAAATTCCCCGACGCCGTCTGCAAACGCAGACAAGCGCACTTCCTCAGTAAGTTCTACCGTATGTCATCCCGACTCAACAGAAGATTACCCCTGTAAGATATGCGGGAAAGTCTTTACAAAGATCAAGAGCCGGAGTGCCCACATGAAATCGCATCGACCACCGGATGCAGAACCCGTAAAACGCAGAGAAAAAGAAGCACATCCTTCGTGTACAAGTTTTGAACTTTCCGTGCCAAGCCCGTTTAATACTTAG
- Protein Sequence
- MLPWETKEDADVSSQIALKPHSKRGNEAVTATFDLFDSSSGPDLTLSPQTFTNSAEAFINDNSNSLGVPADADAVTTTTEDKKPANNNNNSSEVVKLTVKRARPKAASPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSATVNTTTTTMSPAQGAASGDAASPHGSSCIQYAPPPTSTSNGKSQLQQLLATEPAKSGSGGNNDGLTKQQLDLIHQIMEQTQRQSQSASKPTTKPTTKPINKTPVKVQRVWTSTTQQTSSNKTSGSATSPQAKVTTTTPSTSPAATTAPNKPEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKCEKKDAGGPPLQTASVSVRALIEEKIINKRITNPQTSSAASSSTEEPQQKSTAPPLFPLTVHSSANSSSDLDTKITSFVVPAPPQQTAEKARRHSDAEAFNVSRTSTTQQKAEALADLILKRDKVSVKRTTSDPGQSSQIIQFQSADSFTLTGVTYQEDGEYLSPSLQDEVFTQVQDTMLLQGVDPHQLASIQFQTDTLLQDQNDQQLQDIALEDYTNLQEAVVQSPSYQSGHSVNQELQAVLDSPLPESLAEFSTFHSTTNLDIPSPGYQTQSPAQFTGSPHTSLTAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPCFAQSTLLPMVSPKQNEFGQVVERGVDEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGESIPTDDIYPLTNSPPPQSPLSVGLTPVPSPLSNIVTTSPSPHPSTTFTPSPSTVTFPMSPHYTLQSQMMPNSEDPLLSSSPKDFATRKKFEFNGVPLRVISNNGLLDLNSSNFAGILVDANGEIKFIQTGGNTFHAKNFLLANTLISQQGDEKNAAQKQPKVLKIPTKQIIARPKQINDLKREENNDVFLSPTTIPASPVRTSRKRPRSEPLQLPVLHQSKLRATRSKPQGFAPYTPQPILNPQRPGTGLYANIKIKTEEETSWNTDPTPETDSTPHINVGPQFQCTIPPFTSAPNRTNPEPTYEDLLWDPGISGCTDSEVDMYLDFACCAAVPGGGRNKEYAMHLLHMCGGNIHDAMLKLMQPAPILPSDHPLLCYQYNESDKWTSTETDVFHKALLKHDKDFRSIAQEIGTKNVKQCIQFYYVWKKVCLDEYRKLKYLRERRHNHKGAESDVEEKPYPDAKLLGIVDSGSPMPVPETRSFICEFADCSASFNSRAALNGHIRIHGGTARNSPTPSANADKRTSSVSSTVCHPDSTEDYPCKICGKVFTKIKSRSAHMKSHRPPDAEPVKRREKEAHPSCTSFELSVPSPFNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480056;
- 90% Identity
- iTF_01410263;
- 80% Identity
- iTF_00752896;